This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2f6k

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
m (Protected "2f6k" [edit=sysop:move=sysop])
Current revision (09:53, 5 May 2021) (edit) (undo)
 
(6 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:2f6k.png|left|200px]]
 
-
{{STRUCTURE_2f6k| PDB=2f6k | SCENE= }}
+
==Crystal Structure of Amidohydrorolase II; Northeast Structural Genomics Target LpR24==
-
 
+
<StructureSection load='2f6k' size='340' side='right'caption='[[2f6k]], [[Resolution|resolution]] 2.50&Aring;' scene=''>
-
===Crystal Structure of Amidohydrorolase II; Northeast Structural Genomics Target LpR24===
+
== Structural highlights ==
-
 
+
<table><tr><td colspan='2'>[[2f6k]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Lacpl Lacpl]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2F6K OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2F6K FirstGlance]. <br>
-
 
+
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene></td></tr>
-
==About this Structure==
+
<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-
[[2f6k]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Lactobacillus_plantarum Lactobacillus plantarum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2F6K OCA].
+
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/Aminocarboxymuconate-semialdehyde_decarboxylase Aminocarboxymuconate-semialdehyde decarboxylase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=4.1.1.45 4.1.1.45] </span></td></tr>
 +
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2f6k FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2f6k OCA], [https://pdbe.org/2f6k PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2f6k RCSB], [https://www.ebi.ac.uk/pdbsum/2f6k PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2f6k ProSAT], [https://www.topsan.org/Proteins/NESGC/2f6k TOPSAN]</span></td></tr>
 +
</table>
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/f6/2f6k_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2f6k ConSurf].
 +
<div style="clear:both"></div>
 +
__TOC__
 +
</StructureSection>
[[Category: Aminocarboxymuconate-semialdehyde decarboxylase]]
[[Category: Aminocarboxymuconate-semialdehyde decarboxylase]]
-
[[Category: Lactobacillus plantarum]]
+
[[Category: Lacpl]]
-
[[Category: Acton, T.]]
+
[[Category: Large Structures]]
-
[[Category: Arnold, E.]]
+
[[Category: Acton, T]]
-
[[Category: Das, K.]]
+
[[Category: Arnold, E]]
-
[[Category: Ma, L.]]
+
[[Category: Das, K]]
-
[[Category: Montelione, G T.]]
+
[[Category: Ma, L]]
-
[[Category: NESG, Northeast Structural Genomics Consortium.]]
+
[[Category: Montelione, G T]]
-
[[Category: Xiao, R.]]
+
[[Category: Structural genomic]]
 +
[[Category: Xiao, R]]
 +
[[Category: Acm]]
[[Category: Acmd]]
[[Category: Acmd]]
-
[[Category: Acm]]
 
[[Category: Aminohydro_2]]
[[Category: Aminohydro_2]]
[[Category: Lyase]]
[[Category: Lyase]]
Line 24: Line 38:
[[Category: Nesg]]
[[Category: Nesg]]
[[Category: Nitrobenzoic acid biodegradation]]
[[Category: Nitrobenzoic acid biodegradation]]
-
[[Category: Northeast structural genomics consortium]]
+
[[Category: PSI, Protein structure initiative]]
-
[[Category: Protein structure initiative]]
+
-
[[Category: Psi]]
+
[[Category: Quin]]
[[Category: Quin]]
[[Category: Quinolinic acid]]
[[Category: Quinolinic acid]]
-
[[Category: Structural genomic]]
 
[[Category: Tryptophan-nda metabolism]]
[[Category: Tryptophan-nda metabolism]]

Current revision

Crystal Structure of Amidohydrorolase II; Northeast Structural Genomics Target LpR24

PDB ID 2f6k

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools