2kid

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[[Image:2kid.png|left|200px]]
 
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{{STRUCTURE_2kid| PDB=2kid | SCENE= }}
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==Solution Structure of the S. Aureus Sortase A-substrate Complex==
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<StructureSection load='2kid' size='340' side='right'caption='[[2kid]]' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[2kid]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Staphylococcus_aureus Staphylococcus aureus]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2KID OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2KID FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=B27:(2R,3S)+3-AMINO-4-MERCAPTO-2-BUTANOL'>B27</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=PHQ:BENZYL+CHLOROCARBONATE'>PHQ</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2kid FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2kid OCA], [https://pdbe.org/2kid PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2kid RCSB], [https://www.ebi.ac.uk/pdbsum/2kid PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2kid ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/Q9S446_STAAU Q9S446_STAAU]
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ki/2kid_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2kid ConSurf].
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<div style="clear:both"></div>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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In Gram-positive bacteria, sortase enzymes assemble surface proteins and pili in the cell wall envelope. Sortases catalyze a transpeptidation reaction that joins a highly conserved LPXTG sorting signal within their polypeptide substrate to the cell wall or to other pilin subunits. The molecular basis of transpeptidation and sorting signal recognition are not well understood, because the intermediates of catalysis are short lived. We have overcome this problem by synthesizing an analog of the LPXTG signal whose stable covalent complex with the enzyme mimics a key thioacyl catalytic intermediate. Here we report the solution structure and dynamics of its covalent complex with the Staphylococcus aureus SrtA sortase. In marked contrast to a previously reported crystal structure, we show that SrtA adaptively recognizes the LPXTG sorting signal by closing and immobilizing an active site loop. We have also used chemical shift mapping experiments to localize the binding site for the triglycine portion of lipid II, the second substrate to which surface proteins are attached. We propose a unified model of the transpeptidation reaction that explains the functions of key active site residues. Since the sortase-catalyzed anchoring reaction is required for the virulence of a number of bacterial pathogens, the results presented here may facilitate the development of new anti-infective agents.
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===Solution Structure of the S. Aureus Sortase A-substrate Complex===
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The structure of the Staphylococcus aureus sortase-substrate complex reveals how the universally conserved LPXTG sorting signal is recognized.,Suree N, Liew CK, Villareal VA, Thieu W, Fadeev EA, Clemens JJ, Jung ME, Clubb RT J Biol Chem. 2009 Sep 4;284(36):24465-77. Epub 2009 Jul 10. PMID:19592495<ref>PMID:19592495</ref>
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{{ABSTRACT_PUBMED_19592495}}
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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==About this Structure==
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<div class="pdbe-citations 2kid" style="background-color:#fffaf0;"></div>
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[[2kid]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Staphylococcus_aureus Staphylococcus aureus]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2KID OCA].
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== References ==
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<references/>
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==Reference==
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__TOC__
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<ref group="xtra">PMID:019592495</ref><references group="xtra"/>
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</StructureSection>
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[[Category: Large Structures]]
[[Category: Staphylococcus aureus]]
[[Category: Staphylococcus aureus]]
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[[Category: Clemens, J J.]]
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[[Category: Clemens JJ]]
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[[Category: Clubb, R T.]]
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[[Category: Clubb RT]]
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[[Category: Fadeev, E A.]]
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[[Category: Fadeev EA]]
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[[Category: Jung, M E.]]
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[[Category: Jung ME]]
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[[Category: Liew, C K.]]
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[[Category: Liew CK]]
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[[Category: Suree, N.]]
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[[Category: Suree N]]
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[[Category: Thieu, W.]]
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[[Category: Thieu W]]
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[[Category: Villareal, V A.]]
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[[Category: Villareal VA]]
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[[Category: Eight stranded beta barrel]]
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[[Category: Enzyme-substrate complex]]
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[[Category: Hydrolase-hydrolase inhibitor complex]]
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[[Category: Sortase]]
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[[Category: Transpeptidase]]
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Current revision

Solution Structure of the S. Aureus Sortase A-substrate Complex

PDB ID 2kid

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