This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.
Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.
2khl
From Proteopedia
(Difference between revisions)
| (8 intermediate revisions not shown.) | |||
| Line 1: | Line 1: | ||
| - | [[Image:2khl.png|left|200px]] | ||
| - | + | ==Refined solution structure of Methanosarcina thermophila protein MC1== | |
| - | + | <StructureSection load='2khl' size='340' side='right'caption='[[2khl]]' scene=''> | |
| - | + | == Structural highlights == | |
| - | + | <table><tr><td colspan='2'>[[2khl]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Methanosarcina_thermophila Methanosarcina thermophila]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2KHL OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2KHL FirstGlance]. <br> | |
| - | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr> | |
| - | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2khl FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2khl OCA], [https://pdbe.org/2khl PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2khl RCSB], [https://www.ebi.ac.uk/pdbsum/2khl PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2khl ProSAT]</span></td></tr> | |
| - | == | + | </table> |
| - | [[2khl]] is a 1 chain structure with sequence from [ | + | == Function == |
| + | [https://www.uniprot.org/uniprot/HMC1_METTE HMC1_METTE] Protects DNA against thermal denaturation and modulates transcription. | ||
| + | == Evolutionary Conservation == | ||
| + | [[Image:Consurf_key_small.gif|200px|right]] | ||
| + | Check<jmol> | ||
| + | <jmolCheckbox> | ||
| + | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/kh/2khl_consurf.spt"</scriptWhenChecked> | ||
| + | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | ||
| + | <text>to colour the structure by Evolutionary Conservation</text> | ||
| + | </jmolCheckbox> | ||
| + | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2khl ConSurf]. | ||
| + | <div style="clear:both"></div> | ||
| + | __TOC__ | ||
| + | </StructureSection> | ||
| + | [[Category: Large Structures]] | ||
[[Category: Methanosarcina thermophila]] | [[Category: Methanosarcina thermophila]] | ||
| - | [[Category: Culard | + | [[Category: Culard F]] |
| - | [[Category: Lancelot | + | [[Category: Lancelot G]] |
| - | [[Category: Meudal | + | [[Category: Meudal H]] |
| - | [[Category: Paquet | + | [[Category: Paquet F]] |
| - | + | ||
| - | + | ||
| - | + | ||
| - | + | ||
Current revision
Refined solution structure of Methanosarcina thermophila protein MC1
| |||||||||||
