This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2o3j

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (10:29, 30 August 2023) (edit) (undo)
 
(8 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:2o3j.png|left|200px]]
 
-
{{STRUCTURE_2o3j| PDB=2o3j | SCENE= }}
+
==Structure of Caenorhabditis Elegans UDP-Glucose Dehydrogenase==
-
 
+
<StructureSection load='2o3j' size='340' side='right'caption='[[2o3j]], [[Resolution|resolution]] 1.88&Aring;' scene=''>
-
===Structure of Caenorhabditis Elegans UDP-Glucose Dehydrogenase===
+
== Structural highlights ==
-
 
+
<table><tr><td colspan='2'>[[2o3j]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Caenorhabditis_elegans Caenorhabditis elegans]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2O3J OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2O3J FirstGlance]. <br>
-
 
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.88&#8491;</td></tr>
-
==About this Structure==
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene></td></tr>
-
[[2o3j]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/Caenorhabditis_elegans Caenorhabditis elegans]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2O3J OCA].
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2o3j FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2o3j OCA], [https://pdbe.org/2o3j PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2o3j RCSB], [https://www.ebi.ac.uk/pdbsum/2o3j PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2o3j ProSAT], [https://www.topsan.org/Proteins/NYSGXRC/2o3j TOPSAN]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/UGDH_CAEEL UGDH_CAEEL] Involved in the biosynthesis of glycosaminoglycans; hyaluronan, chondroitin sulfate, and heparan sulfate.
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/o3/2o3j_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2o3j ConSurf].
 +
<div style="clear:both"></div>
 +
__TOC__
 +
</StructureSection>
[[Category: Caenorhabditis elegans]]
[[Category: Caenorhabditis elegans]]
-
[[Category: UDP-glucose 6-dehydrogenase]]
+
[[Category: Large Structures]]
-
[[Category: Almo, S C.]]
+
[[Category: Almo SC]]
-
[[Category: Burley, S K.]]
+
[[Category: Burley SK]]
-
[[Category: Milst, S.]]
+
[[Category: Milst S]]
-
[[Category: NYSGXRC, New York SGX Research Center for Structural Genomics.]]
+
[[Category: Patskovsky Y]]
-
[[Category: Patskovsky, Y.]]
+
[[Category: Ramagopal U]]
-
[[Category: Ramagopal, U.]]
+
[[Category: Shi W]]
-
[[Category: Shi, W.]]
+
[[Category: Toro R]]
-
[[Category: Toro, R.]]
+
[[Category: Vidal M]]
-
[[Category: Vidal, M.]]
+
[[Category: Wengerter BC]]
-
[[Category: Wengerter, B C.]]
+
[[Category: Zhan C]]
-
[[Category: Zhan, C.]]
+
[[Category: Zhang Y]]
-
[[Category: Zhang, Y.]]
+
-
[[Category: New york sgx research center for structural genomic]]
+
-
[[Category: Nysgxrc]]
+
-
[[Category: Oxidoreductase]]
+
-
[[Category: Protein structure initiative]]
+
-
[[Category: Psi-2]]
+
-
[[Category: Structural genomic]]
+
-
[[Category: Udp-glucose dehydrogenase]]
+

Current revision

Structure of Caenorhabditis Elegans UDP-Glucose Dehydrogenase

PDB ID 2o3j

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools