This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2k5d

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (09:44, 9 May 2024) (edit) (undo)
 
(9 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:2k5d.png|left|200px]]
 
-
{{STRUCTURE_2k5d| PDB=2k5d | SCENE= }}
+
==SOLUTION NMR STRUCTURE OF SAG0934 from Streptococcus agalactiae. NORTHEAST STRUCTURAL GENOMICS TARGET SaR32[1-108].==
-
 
+
<StructureSection load='2k5d' size='340' side='right'caption='[[2k5d]]' scene=''>
-
===SOLUTION NMR STRUCTURE OF SAG0934 from Streptococcus agalactiae. NORTHEAST STRUCTURAL GENOMICS TARGET SaR32[1-108].===
+
== Structural highlights ==
-
 
+
<table><tr><td colspan='2'>[[2k5d]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Streptococcus_agalactiae_serogroup_V Streptococcus agalactiae serogroup V]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2K5D OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2K5D FirstGlance]. <br>
-
 
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr>
-
==About this Structure==
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2k5d FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2k5d OCA], [https://pdbe.org/2k5d PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2k5d RCSB], [https://www.ebi.ac.uk/pdbsum/2k5d PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2k5d ProSAT], [https://www.topsan.org/Proteins/NESGC/2k5d TOPSAN]</span></td></tr>
-
[[2k5d]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Streptococcus_agalactiae_serogroup_v Streptococcus agalactiae serogroup v]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2K5D OCA].
+
</table>
-
[[Category: Streptococcus agalactiae serogroup v]]
+
== Function ==
-
[[Category: Acton, T B.]]
+
[https://www.uniprot.org/uniprot/Q8E006_STRA5 Q8E006_STRA5]
-
[[Category: Aramini, J M.]]
+
== Evolutionary Conservation ==
-
[[Category: Everett, J K.]]
+
[[Image:Consurf_key_small.gif|200px|right]]
-
[[Category: Foote, E L.]]
+
Check<jmol>
-
[[Category: Jiang, M.]]
+
<jmolCheckbox>
-
[[Category: Montelione, G T.]]
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/k5/2k5d_consurf.spt"</scriptWhenChecked>
-
[[Category: NESG, Northeast Structural Genomics Consortium.]]
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
[[Category: Nair, R.]]
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: Rossi, P.]]
+
</jmolCheckbox>
-
[[Category: Rost, B.]]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2k5d ConSurf].
-
[[Category: Sharma, S.]]
+
<div style="clear:both"></div>
-
[[Category: Swapna, G VT.]]
+
__TOC__
-
[[Category: Xiao, R.]]
+
</StructureSection>
-
[[Category: Zhao, L.]]
+
[[Category: Large Structures]]
-
[[Category: Construct optimized]]
+
[[Category: Streptococcus agalactiae serogroup V]]
-
[[Category: Duf961]]
+
[[Category: Acton TB]]
-
[[Category: Nesg]]
+
[[Category: Aramini JM]]
-
[[Category: Northeast structural genomics consortium]]
+
[[Category: Everett JK]]
-
[[Category: Primosomal protein]]
+
[[Category: Foote EL]]
-
[[Category: Protein structure initiative]]
+
[[Category: Jiang M]]
-
[[Category: Psi-2]]
+
[[Category: Montelione GT]]
-
[[Category: Solution nmr structure]]
+
[[Category: Nair R]]
-
[[Category: Structural genomic]]
+
[[Category: Rossi P]]
-
[[Category: Unknown function]]
+
[[Category: Rost B]]
 +
[[Category: Sharma S]]
 +
[[Category: Swapna GVT]]
 +
[[Category: Xiao R]]
 +
[[Category: Zhao L]]

Current revision

SOLUTION NMR STRUCTURE OF SAG0934 from Streptococcus agalactiae. NORTHEAST STRUCTURAL GENOMICS TARGET SaR32[1-108].

PDB ID 2k5d

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools