2inf

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[[Image:2inf.png|left|200px]]
 
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{{STRUCTURE_2inf| PDB=2inf | SCENE= }}
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==Crystal Structure of Uroporphyrinogen Decarboxylase from Bacillus subtilis==
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<StructureSection load='2inf' size='340' side='right'caption='[[2inf]], [[Resolution|resolution]] 2.30&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[2inf]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Bacillus_subtilis Bacillus subtilis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2INF OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2INF FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.3&#8491;</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2inf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2inf OCA], [https://pdbe.org/2inf PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2inf RCSB], [https://www.ebi.ac.uk/pdbsum/2inf PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2inf ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/DCUP_BACSU DCUP_BACSU] Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III.<ref>PMID:17122346</ref>
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/in/2inf_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2inf ConSurf].
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<div style="clear:both"></div>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Uroporphyrinogen decarboxylase (UROD) is a branch point enzyme in the biosynthesis of the tetrapyrroles. It catalyzes the decarboxylation of four acetate groups of uroporphyrinogen III to yield coproporphyrinogen III, leading to heme and chlorophyll biosynthesis. UROD is a special type of nonoxidative decarboxylase, since no cofactor is essential for catalysis. In this work, the first crystal structure of a bacterial UROD, Bacillus subtilis UROD (UROD(Bs)), has been determined at a 2.3 A resolution. The biological unit of UROD(Bs) was determined by dynamic light scattering measurements to be a homodimer in solution. There are four molecules in the crystallographic asymmetric unit, corresponding to two homodimers. Structural comparison of UROD(Bs) with eukaryotic URODs reveals a variation of two loops, which possibly affect the binding of substrates and release of products. Structural comparison with the human UROD-coproporphyrinogen III complex discloses a similar active cleft, with five invariant polar residues (Arg29, Arg33, Asp78, Tyr154, and His322) and three invariant hydrophobic residues (Ile79, Phe144, and Phe207), in UROD(Bs). Among them, Asp78 may interact with the pyrrole NH groups of the substrate, and Arg29 is a candidate for positioning the acetate groups of the substrate. Both residues may also play catalytic roles.
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===Crystal Structure of Uroporphyrinogen Decarboxylase from Bacillus subtilis===
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Crystal structure of uroporphyrinogen decarboxylase from Bacillus subtilis.,Fan J, Liu Q, Hao Q, Teng M, Niu L J Bacteriol. 2007 May;189(9):3573-80. Epub 2006 Nov 22. PMID:17122346<ref>PMID:17122346</ref>
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{{ABSTRACT_PUBMED_17122346}}
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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==About this Structure==
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<div class="pdbe-citations 2inf" style="background-color:#fffaf0;"></div>
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[[2inf]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Bacillus_subtilis Bacillus subtilis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2INF OCA].
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== References ==
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<references/>
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==Reference==
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__TOC__
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<ref group="xtra">PMID:017122346</ref><references group="xtra"/>
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</StructureSection>
[[Category: Bacillus subtilis]]
[[Category: Bacillus subtilis]]
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[[Category: Uroporphyrinogen decarboxylase]]
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[[Category: Large Structures]]
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[[Category: Fan, J.]]
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[[Category: Fan J]]
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[[Category: Hao, Q.]]
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[[Category: Hao Q]]
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[[Category: Liu, Q.]]
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[[Category: Liu Q]]
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[[Category: Niu, L W.]]
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[[Category: Niu LW]]
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[[Category: Teng, M K.]]
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[[Category: Teng MK]]
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[[Category: Eight parallel beta strands surrounded by eight alpha helice]]
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[[Category: Lyase]]
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Current revision

Crystal Structure of Uroporphyrinogen Decarboxylase from Bacillus subtilis

PDB ID 2inf

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