This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3bvc

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (09:31, 21 February 2024) (edit) (undo)
 
(7 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:3bvc.png|left|200px]]
 
-
{{STRUCTURE_3bvc| PDB=3bvc | SCENE= }}
+
==Crystal structure of uncharacterized protein Ism_01780 from Roseovarius nubinhibens ISM==
-
 
+
<StructureSection load='3bvc' size='340' side='right'caption='[[3bvc]], [[Resolution|resolution]] 2.75&Aring;' scene=''>
-
===Crystal structure of uncharacterized protein Ism_01780 from Roseovarius nubinhibens ISM===
+
== Structural highlights ==
-
 
+
<table><tr><td colspan='2'>[[3bvc]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Roseovarius_nubinhibens_ISM Roseovarius nubinhibens ISM]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3BVC OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3BVC FirstGlance]. <br>
-
 
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.75&#8491;</td></tr>
-
==About this Structure==
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=NI:NICKEL+(II)+ION'>NI</scene></td></tr>
-
[[3bvc]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Roseovarius_nubinhibens Roseovarius nubinhibens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3BVC OCA].
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3bvc FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3bvc OCA], [https://pdbe.org/3bvc PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3bvc RCSB], [https://www.ebi.ac.uk/pdbsum/3bvc PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3bvc ProSAT], [https://www.topsan.org/Proteins/NYSGXRC/3bvc TOPSAN]</span></td></tr>
-
[[Category: Roseovarius nubinhibens]]
+
</table>
-
[[Category: Almo, S C.]]
+
== Function ==
-
[[Category: Burley, S K.]]
+
[https://www.uniprot.org/uniprot/A3SHZ8_ROSNI A3SHZ8_ROSNI]
-
[[Category: Iizuka, M.]]
+
== Evolutionary Conservation ==
-
[[Category: Maletic, M.]]
+
[[Image:Consurf_key_small.gif|200px|right]]
-
[[Category: Meyer, A J.]]
+
Check<jmol>
-
[[Category: NYSGXRC, New York SGX Research Center for Structural Genomics.]]
+
<jmolCheckbox>
-
[[Category: Patskovsky, Y.]]
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/bv/3bvc_consurf.spt"</scriptWhenChecked>
-
[[Category: Rutter, M.]]
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
[[Category: Sauder, J M.]]
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: Smith, D.]]
+
</jmolCheckbox>
-
[[Category: Toro, R.]]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3bvc ConSurf].
-
[[Category: Wasserman, S.]]
+
<div style="clear:both"></div>
-
[[Category: Iron-binding protein]]
+
__TOC__
-
[[Category: New york sgx research center for structural genomic]]
+
</StructureSection>
-
[[Category: Nickel]]
+
[[Category: Large Structures]]
-
[[Category: Nysgxrc]]
+
[[Category: Roseovarius nubinhibens ISM]]
-
[[Category: Protein structure initiative]]
+
[[Category: Almo SC]]
-
[[Category: Psi-2]]
+
[[Category: Burley SK]]
-
[[Category: Rhodobacterale]]
+
[[Category: Iizuka M]]
-
[[Category: Roseovarius nubinhibens ism]]
+
[[Category: Maletic M]]
-
[[Category: Structural genomic]]
+
[[Category: Meyer AJ]]
-
[[Category: Unknown function]]
+
[[Category: Patskovsky Y]]
 +
[[Category: Rutter M]]
 +
[[Category: Sauder JM]]
 +
[[Category: Smith D]]
 +
[[Category: Toro R]]
 +
[[Category: Wasserman S]]

Current revision

Crystal structure of uncharacterized protein Ism_01780 from Roseovarius nubinhibens ISM

PDB ID 3bvc

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools