This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.
Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.
3djd
From Proteopedia
(Difference between revisions)
| (4 intermediate revisions not shown.) | |||
| Line 1: | Line 1: | ||
| - | [[Image:3djd.png|left|200px]] | ||
| - | + | ==Crystal structure of the deglycating enzyme fructosamine oxidase from Aspergillus fumigatus (Amadoriase II)== | |
| - | + | <StructureSection load='3djd' size='340' side='right'caption='[[3djd]], [[Resolution|resolution]] 1.75Å' scene=''> | |
| - | + | == Structural highlights == | |
| - | + | <table><tr><td colspan='2'>[[3djd]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DJD OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=3DJD FirstGlance]. <br> | |
| - | + | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FAD:FLAVIN-ADENINE+DINUCLEOTIDE'>FAD</scene></td></tr> | |
| - | + | <tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr> | |
| - | == | + | <tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[3gje|3gje]]</td></tr> |
| - | [[3djd]] is a 2 chain structure | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=3djd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3djd OCA], [http://pdbe.org/3djd PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3djd RCSB], [http://www.ebi.ac.uk/pdbsum/3djd PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3djd ProSAT]</span></td></tr> |
| - | [[Category: | + | </table> |
| - | [[Category: Collard, F | + | == Evolutionary Conservation == |
| - | [[Category: Monnier, V M | + | [[Image:Consurf_key_small.gif|200px|right]] |
| - | [[Category: Nemet, I | + | Check<jmol> |
| - | [[Category: Qanungo, K R | + | <jmolCheckbox> |
| - | [[Category: Yee, V C | + | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/dj/3djd_consurf.spt"</scriptWhenChecked> |
| - | [[Category: Zhang, J | + | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> |
| + | <text>to colour the structure by Evolutionary Conservation</text> | ||
| + | </jmolCheckbox> | ||
| + | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3djd ConSurf]. | ||
| + | <div style="clear:both"></div> | ||
| + | __TOC__ | ||
| + | </StructureSection> | ||
| + | [[Category: Large Structures]] | ||
| + | [[Category: Collard, F]] | ||
| + | [[Category: Monnier, V M]] | ||
| + | [[Category: Nemet, I]] | ||
| + | [[Category: Qanungo, K R]] | ||
| + | [[Category: Yee, V C]] | ||
| + | [[Category: Zhang, J]] | ||
[[Category: Amadoriase]] | [[Category: Amadoriase]] | ||
[[Category: Deglycation]] | [[Category: Deglycation]] | ||
Current revision
Crystal structure of the deglycating enzyme fructosamine oxidase from Aspergillus fumigatus (Amadoriase II)
| |||||||||||
