This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2rkk

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
m (Protected "2rkk" [edit=sysop:move=sysop])
Current revision (09:23, 21 February 2024) (edit) (undo)
 
(5 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:2rkk.png|left|200px]]
 
-
{{STRUCTURE_2rkk| PDB=2rkk | SCENE= }}
+
==Crystal Structure of S.cerevisiae Vta1 N-terminal domain==
 +
<StructureSection load='2rkk' size='340' side='right'caption='[[2rkk]], [[Resolution|resolution]] 2.90&Aring;' scene=''>
 +
== Structural highlights ==
 +
<table><tr><td colspan='2'>[[2rkk]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Saccharomyces_cerevisiae Saccharomyces cerevisiae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2RKK OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2RKK FirstGlance]. <br>
 +
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.9&#8491;</td></tr>
 +
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2rkk FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2rkk OCA], [https://pdbe.org/2rkk PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2rkk RCSB], [https://www.ebi.ac.uk/pdbsum/2rkk PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2rkk ProSAT]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/VTA1_YEAST VTA1_YEAST] Has a role in the formation of the multivesicular body (MVB). Required for the sorting of lipids to form intralumenal vesicles and for fluid-phase transport to the vacuole. Required for sorting the plasma membrane proteins STE2 and STE3 into the MVB. Acts a cofactor of VSP4, promotes the oligomerization of VPS4 and stimulates its ATPase activity by 6- to 8-fold.<ref>PMID:12953057</ref> <ref>PMID:14701806</ref> <ref>PMID:16505166</ref> <ref>PMID:16601096</ref>
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/rk/2rkk_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2rkk ConSurf].
 +
<div style="clear:both"></div>
-
===Crystal Structure of S.cerevisiae Vta1 N-terminal domain===
+
==See Also==
-
 
+
*[[Vacuolar protein sorting-associated protein 3D structures|Vacuolar protein sorting-associated protein 3D structures]]
-
{{ABSTRACT_PUBMED_18194651}}
+
== References ==
-
 
+
<references/>
-
==About this Structure==
+
__TOC__
-
[[2rkk]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Saccharomyces_cerevisiae Saccharomyces cerevisiae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2RKK OCA].
+
</StructureSection>
-
 
+
[[Category: Large Structures]]
-
==Reference==
+
-
<ref group="xtra">PMID:018194651</ref><references group="xtra"/>
+
[[Category: Saccharomyces cerevisiae]]
[[Category: Saccharomyces cerevisiae]]
-
[[Category: Xia, H.]]
+
[[Category: Xia H]]
-
[[Category: Xiao,J.]]
+
[[Category: Xiao J]]
-
[[Category: Xu, Z.]]
+
[[Category: Xu Z]]
-
[[Category: Zhou, J.]]
+
[[Category: Zhou J]]
-
[[Category: Endosome]]
+
-
[[Category: Lipid transport]]
+
-
[[Category: Membrane]]
+
-
[[Category: Mit motif]]
+
-
[[Category: Protein transport]]
+
-
[[Category: Transport]]
+

Current revision

Crystal Structure of S.cerevisiae Vta1 N-terminal domain

PDB ID 2rkk

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/2rkk"
Personal tools