This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.
Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.
3dhn
From Proteopedia
(Difference between revisions)
m (Protected "3dhn" [edit=sysop:move=sysop]) |
|||
| (3 intermediate revisions not shown.) | |||
| Line 1: | Line 1: | ||
| - | [[Image:3dhn.png|left|200px]] | ||
| - | + | ==Crystal structure of the putative epimerase Q89Z24_BACTN from Bacteroides thetaiotaomicron. Northeast Structural Genomics Consortium target BtR310.== | |
| - | + | <StructureSection load='3dhn' size='340' side='right'caption='[[3dhn]], [[Resolution|resolution]] 2.00Å' scene=''> | |
| - | + | == Structural highlights == | |
| - | + | <table><tr><td colspan='2'>[[3dhn]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/"bacillus_thetaiotaomicron"_distaso_1912 "bacillus thetaiotaomicron" distaso 1912]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DHN OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3DHN FirstGlance]. <br> | |
| - | + | </td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr> | |
| - | == | + | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">BT_4553 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=818 "Bacillus thetaiotaomicron" Distaso 1912])</td></tr> |
| - | [[3dhn]] is a 1 chain structure with sequence from [ | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3dhn FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3dhn OCA], [https://pdbe.org/3dhn PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3dhn RCSB], [https://www.ebi.ac.uk/pdbsum/3dhn PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3dhn ProSAT], [https://www.topsan.org/Proteins/NESGC/3dhn TOPSAN]</span></td></tr> |
| - | [[Category: | + | </table> |
| - | [[Category: Acton, T | + | == Evolutionary Conservation == |
| - | [[Category: Ciccosanti, C | + | [[Image:Consurf_key_small.gif|200px|right]] |
| - | [[Category: Foote, L E | + | Check<jmol> |
| - | [[Category: Hunt, J F | + | <jmolCheckbox> |
| - | [[Category: Janjua, H | + | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/dh/3dhn_consurf.spt"</scriptWhenChecked> |
| - | [[Category: Montelione, G T | + | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> |
| - | [[Category: | + | <text>to colour the structure by Evolutionary Conservation</text> |
| - | [[Category: Seetharaman, J | + | </jmolCheckbox> |
| - | [[Category: Su, M | + | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3dhn ConSurf]. |
| - | [[Category: Tong, L | + | <div style="clear:both"></div> |
| - | [[Category: Vorobiev, S M | + | __TOC__ |
| - | [[Category: Wang, D | + | </StructureSection> |
| - | [[Category: Xiao, R | + | [[Category: Bacillus thetaiotaomicron distaso 1912]] |
| + | [[Category: Large Structures]] | ||
| + | [[Category: Acton, T]] | ||
| + | [[Category: Ciccosanti, C]] | ||
| + | [[Category: Foote, L E]] | ||
| + | [[Category: Hunt, J F]] | ||
| + | [[Category: Janjua, H]] | ||
| + | [[Category: Montelione, G T]] | ||
| + | [[Category: Structural genomic]] | ||
| + | [[Category: Seetharaman, J]] | ||
| + | [[Category: Su, M]] | ||
| + | [[Category: Tong, L]] | ||
| + | [[Category: Vorobiev, S M]] | ||
| + | [[Category: Wang, D]] | ||
| + | [[Category: Xiao, R]] | ||
[[Category: Btr310]] | [[Category: Btr310]] | ||
[[Category: Dehydratase]] | [[Category: Dehydratase]] | ||
| Line 28: | Line 41: | ||
[[Category: Lyase]] | [[Category: Lyase]] | ||
[[Category: Nesg]] | [[Category: Nesg]] | ||
| - | [[Category: Northeast structural genomics consortium]] | ||
[[Category: Pf01370]] | [[Category: Pf01370]] | ||
| - | [[Category: Protein structure initiative | + | [[Category: PSI, Protein structure initiative]] |
| - | + | ||
[[Category: Q89z24_bactn]] | [[Category: Q89z24_bactn]] | ||
[[Category: Reductase]] | [[Category: Reductase]] | ||
| - | [[Category: Structural genomic]] | ||
Current revision
Crystal structure of the putative epimerase Q89Z24_BACTN from Bacteroides thetaiotaomicron. Northeast Structural Genomics Consortium target BtR310.
| |||||||||||
Categories: Bacillus thetaiotaomicron distaso 1912 | Large Structures | Acton, T | Ciccosanti, C | Foote, L E | Hunt, J F | Janjua, H | Montelione, G T | Structural genomic | Seetharaman, J | Su, M | Tong, L | Vorobiev, S M | Wang, D | Xiao, R | Btr310 | Dehydratase | Epimerase | Isomerase | Lyase | Nesg | Pf01370 | PSI, Protein structure initiative | Q89z24 bactn | Reductase
