3cml

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
m (Protected "3cml" [edit=sysop:move=sysop])
Current revision (08:54, 30 October 2024) (edit) (undo)
 
(6 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:3cml.png|left|200px]]
 
-
{{STRUCTURE_3cml| PDB=3cml | SCENE= }}
+
==Crystal Structure of the DBL3x domain of the Plasmodium falcipurum VAR2CSA protein==
 +
<StructureSection load='3cml' size='340' side='right'caption='[[3cml]], [[Resolution|resolution]] 1.90&Aring;' scene=''>
 +
== Structural highlights ==
 +
<table><tr><td colspan='2'>[[3cml]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Plasmodium_falciparum Plasmodium falciparum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3CML OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3CML FirstGlance]. <br>
 +
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.9&#8491;</td></tr>
 +
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3cml FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3cml OCA], [https://pdbe.org/3cml PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3cml RCSB], [https://www.ebi.ac.uk/pdbsum/3cml PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3cml ProSAT]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/Q6UDW7_PLAFA Q6UDW7_PLAFA]
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/cm/3cml_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3cml ConSurf].
 +
<div style="clear:both"></div>
 +
<div style="background-color:#fffaf0;">
 +
== Publication Abstract from PubMed ==
 +
Plasmodium falciparum-infected erythrocytes bind to chondroitin sulfate A (CSA) in the placenta via the VAR2CSA protein, a member of the P. falciparum erythrocyte membrane protein-1 family, leading to life-threatening malaria in pregnant women with severe effects on their fetuses and newborns. Here we describe the structure of the CSA binding DBL3x domain, a Duffy binding-like (DBL) domain of VAR2CSA. By forming a complex of DBL3x with CSA oligosaccharides and determining its structure, we have identified the CSA binding site to be a cluster of conserved positively charged residues on subdomain 2 and subdomain 3. Mutation or chemical modification of lysine residues at the site markedly diminished CSA binding to DBL3x. The location of the CSA binding site is an important step forward in the molecular understanding of pregnancy-associated malaria and offers a new target for vaccine development.
-
===Crystal Structure of the DBL3x domain of the Plasmodium falcipurum VAR2CSA protein===
+
Structure of the DBL3x domain of pregnancy-associated malaria protein VAR2CSA complexed with chondroitin sulfate A.,Singh K, Gittis AG, Nguyen P, Gowda DC, Miller LH, Garboczi DN Nat Struct Mol Biol. 2008 Sep;15(9):932-8. PMID:19172746<ref>PMID:19172746</ref>
-
{{ABSTRACT_PUBMED_19172746}}
+
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
-
 
+
</div>
-
==About this Structure==
+
<div class="pdbe-citations 3cml" style="background-color:#fffaf0;"></div>
-
[[3cml]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Plasmodium_falciparum Plasmodium falciparum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3CML OCA].
+
== References ==
-
 
+
<references/>
-
==Reference==
+
__TOC__
-
<ref group="xtra">PMID:019172746</ref><references group="xtra"/>
+
</StructureSection>
 +
[[Category: Large Structures]]
[[Category: Plasmodium falciparum]]
[[Category: Plasmodium falciparum]]
-
[[Category: Garboczi, D N.]]
+
[[Category: Garboczi DN]]
-
[[Category: Gittis, A G.]]
+
[[Category: Gittis AG]]
-
[[Category: Gowda, D C.]]
+
[[Category: Gowda DC]]
-
[[Category: Miller, L H.]]
+
[[Category: Miller LH]]
-
[[Category: Nguyen, P.]]
+
[[Category: Nguyen P]]
-
[[Category: Singh, K.]]
+
[[Category: Singh K]]
-
[[Category: Chondroitin-sulfate binding domain]]
+
-
[[Category: Dbl3x]]
+
-
[[Category: Membrane protein]]
+
-
[[Category: Var2csa]]
+

Current revision

Crystal Structure of the DBL3x domain of the Plasmodium falcipurum VAR2CSA protein

PDB ID 3cml

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/3cml"
Personal tools