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2yqr

From Proteopedia

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[[Image:2yqr.png|left|200px]]
 
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{{STRUCTURE_2yqr| PDB=2yqr | SCENE= }}
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==Solution structure of the KH domain in KIAA0907 protein==
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<StructureSection load='2yqr' size='340' side='right'caption='[[2yqr]]' scene=''>
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===Solution structure of the KH domain in KIAA0907 protein===
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== Structural highlights ==
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<table><tr><td colspan='2'>[[2yqr]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2YQR OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2YQR FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr>
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==About this Structure==
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2yqr FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2yqr OCA], [https://pdbe.org/2yqr PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2yqr RCSB], [https://www.ebi.ac.uk/pdbsum/2yqr PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2yqr ProSAT], [https://www.topsan.org/Proteins/RSGI/2yqr TOPSAN]</span></td></tr>
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[[2yqr]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2YQR OCA].
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/KHDC4_HUMAN KHDC4_HUMAN] RNA-binding protein involved in pre-mRNA splicing (PubMed:19641227). Interacts with the PRP19C/Prp19 complex/NTC/Nineteen complex which is part of the spliceosome (PubMed:19641227). Involved in regulating splice site selection (PubMed:19641227). Binds preferentially RNA with A/C rich sequences and poly-C stretches (PubMed:23144703).<ref>PMID:19641227</ref> <ref>PMID:23144703</ref>
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/yq/2yqr_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2yqr ConSurf].
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<div style="clear:both"></div>
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== References ==
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<references/>
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__TOC__
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</StructureSection>
[[Category: Homo sapiens]]
[[Category: Homo sapiens]]
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[[Category: He, F.]]
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[[Category: Large Structures]]
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[[Category: Inoue, M.]]
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[[Category: He F]]
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[[Category: Kadirvel, S.]]
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[[Category: Inoue M]]
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[[Category: Kigawa, T.]]
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[[Category: Kadirvel S]]
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[[Category: Muto, Y.]]
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[[Category: Kigawa T]]
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[[Category: RSGI, RIKEN Structural Genomics/Proteomics Initiative.]]
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[[Category: Muto Y]]
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[[Category: Shirouzu, M.]]
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[[Category: Shirouzu M]]
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[[Category: Tarada, T.]]
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[[Category: Tarada T]]
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[[Category: Yokoyama, S.]]
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[[Category: Yokoyama S]]
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[[Category: Kh domain]]
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[[Category: National project on protein structural and functional analyse]]
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[[Category: Nppsfa]]
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[[Category: Riken structural genomics/proteomics initiative]]
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[[Category: Rna binding protein]]
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[[Category: Rsgi]]
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[[Category: Structural genomic]]
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[[Category: Structure genomic]]
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Current revision

Solution structure of the KH domain in KIAA0907 protein

PDB ID 2yqr

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OCA

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