This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.
Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.
3d3u
From Proteopedia
(Difference between revisions)
m (Protected "3d3u" [edit=sysop:move=sysop]) |
|||
| (3 intermediate revisions not shown.) | |||
| Line 1: | Line 1: | ||
| - | [[Image:3d3u.png|left|200px]] | ||
| - | + | ==Crystal structure of 4-hydroxybutyrate CoA-transferase (abfT-2) from Porphyromonas gingivalis. Northeast Structural Genomics Consortium target PgR26== | |
| - | + | <StructureSection load='3d3u' size='340' side='right'caption='[[3d3u]], [[Resolution|resolution]] 2.80Å' scene=''> | |
| - | + | == Structural highlights == | |
| - | + | <table><tr><td colspan='2'>[[3d3u]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Porgi Porgi]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3D3U OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3D3U FirstGlance]. <br> | |
| - | + | </td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">abfT-2, PG_1956 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=242619 PORGI])</td></tr> | |
| - | == | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3d3u FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3d3u OCA], [https://pdbe.org/3d3u PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3d3u RCSB], [https://www.ebi.ac.uk/pdbsum/3d3u PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3d3u ProSAT], [https://www.topsan.org/Proteins/NESGC/3d3u TOPSAN]</span></td></tr> |
| - | [[3d3u]] is a 1 chain structure with sequence from [ | + | </table> |
| - | [[Category: | + | == Evolutionary Conservation == |
| - | [[Category: Acton, T B | + | [[Image:Consurf_key_small.gif|200px|right]] |
| - | [[Category: Conover, K | + | Check<jmol> |
| - | [[Category: Cunningham, K | + | <jmolCheckbox> |
| - | [[Category: Everett, J K | + | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/d3/3d3u_consurf.spt"</scriptWhenChecked> |
| - | [[Category: Forouhar, F | + | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> |
| - | [[Category: Ho, C K | + | <text>to colour the structure by Evolutionary Conservation</text> |
| - | [[Category: Hunt, J F | + | </jmolCheckbox> |
| - | [[Category: Hussain, M | + | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3d3u ConSurf]. |
| - | [[Category: II, W N.Price | + | <div style="clear:both"></div> |
| - | [[Category: Ma, L | + | __TOC__ |
| - | [[Category: Montelione, G T | + | </StructureSection> |
| - | [[Category: | + | [[Category: Large Structures]] |
| - | [[Category: Neely, H | + | [[Category: Porgi]] |
| - | [[Category: Seetharaman, J | + | [[Category: Acton, T B]] |
| - | [[Category: Tong, L | + | [[Category: Conover, K]] |
| - | [[Category: Xiao, R | + | [[Category: Cunningham, K]] |
| - | [[Category: Zhang, X | + | [[Category: Everett, J K]] |
| + | [[Category: Forouhar, F]] | ||
| + | [[Category: Ho, C K]] | ||
| + | [[Category: Hunt, J F]] | ||
| + | [[Category: Hussain, M]] | ||
| + | [[Category: II, W N.Price]] | ||
| + | [[Category: Ma, L C]] | ||
| + | [[Category: Montelione, G T]] | ||
| + | [[Category: Structural genomic]] | ||
| + | [[Category: Neely, H]] | ||
| + | [[Category: Seetharaman, J]] | ||
| + | [[Category: Tong, L]] | ||
| + | [[Category: Xiao, R]] | ||
| + | [[Category: Zhang, X Z]] | ||
[[Category: Alpha-beta protein]] | [[Category: Alpha-beta protein]] | ||
[[Category: Nesg]] | [[Category: Nesg]] | ||
| - | [[Category: | + | [[Category: PSI, Protein structure initiative]] |
| - | + | ||
| - | + | ||
| - | + | ||
[[Category: Transferase]] | [[Category: Transferase]] | ||
Current revision
Crystal structure of 4-hydroxybutyrate CoA-transferase (abfT-2) from Porphyromonas gingivalis. Northeast Structural Genomics Consortium target PgR26
| |||||||||||
Categories: Large Structures | Porgi | Acton, T B | Conover, K | Cunningham, K | Everett, J K | Forouhar, F | Ho, C K | Hunt, J F | Hussain, M | II, W N.Price | Ma, L C | Montelione, G T | Structural genomic | Neely, H | Seetharaman, J | Tong, L | Xiao, R | Zhang, X Z | Alpha-beta protein | Nesg | PSI, Protein structure initiative | Transferase
