2wfb

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (15:54, 13 December 2023) (edit) (undo)
 
(7 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:2wfb.png|left|200px]]
 
-
{{STRUCTURE_2wfb| PDB=2wfb | SCENE= }}
+
==High resolution structure of the apo form of the orange protein (ORP) from Desulfovibrio gigas==
-
 
+
<StructureSection load='2wfb' size='340' side='right'caption='[[2wfb]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
-
===HIGH RESOLUTION STRUCTURE OF THE APO FORM OF THE ORANGE PROTEIN (ORP) FROM DESULFOVIBRIO GIGAS===
+
== Structural highlights ==
-
 
+
<table><tr><td colspan='2'>[[2wfb]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Megalodesulfovibrio_gigas Megalodesulfovibrio gigas]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2WFB OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2WFB FirstGlance]. <br>
-
{{ABSTRACT_PUBMED_19574652}}
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2&#8491;</td></tr>
-
 
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>
-
==About this Structure==
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2wfb FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2wfb OCA], [https://pdbe.org/2wfb PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2wfb RCSB], [https://www.ebi.ac.uk/pdbsum/2wfb PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2wfb ProSAT]</span></td></tr>
-
[[2wfb]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Desulfovibrio_gigas Desulfovibrio gigas]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2WFB OCA].
+
</table>
-
 
+
== Function ==
-
==Reference==
+
[https://www.uniprot.org/uniprot/Q5DUA6_MEGGA Q5DUA6_MEGGA]
-
<ref group="xtra">PMID:019574652</ref><references group="xtra"/>
+
== Evolutionary Conservation ==
-
[[Category: Desulfovibrio gigas]]
+
[[Image:Consurf_key_small.gif|200px|right]]
-
[[Category: Bonifacio, C.]]
+
Check<jmol>
-
[[Category: Duarte, A G.]]
+
<jmolCheckbox>
-
[[Category: Moura, I.]]
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/wf/2wfb_consurf.spt"</scriptWhenChecked>
-
[[Category: Moura, J M.]]
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
[[Category: Najmudin, S.]]
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: Pereira, A S.]]
+
</jmolCheckbox>
-
[[Category: Romao, M J.]]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2wfb ConSurf].
-
[[Category: Alpha and beta protein]]
+
<div style="clear:both"></div>
-
[[Category: Biosynthetic protein]]
+
__TOC__
-
[[Category: Mixed molybdenum-copper sulphide cluster]]
+
</StructureSection>
 +
[[Category: Large Structures]]
 +
[[Category: Megalodesulfovibrio gigas]]
 +
[[Category: Bonifacio C]]
 +
[[Category: Duarte AG]]
 +
[[Category: Moura I]]
 +
[[Category: Moura JM]]
 +
[[Category: Najmudin S]]
 +
[[Category: Pereira AS]]
 +
[[Category: Romao MJ]]

Current revision

High resolution structure of the apo form of the orange protein (ORP) from Desulfovibrio gigas

PDB ID 2wfb

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools