2r53

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[[Image:2r53.png|left|200px]]
 
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{{STRUCTURE_2r53| PDB=2r53 | SCENE= }}
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==Crystal structure analysis of Bone Morphogenetic Protein-6 variant B2 (B2-BMP-6)==
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<StructureSection load='2r53' size='340' side='right'caption='[[2r53]], [[Resolution|resolution]] 2.10&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[2r53]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2R53 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2R53 FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.1&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MPD:(4S)-2-METHYL-2,4-PENTANEDIOL'>MPD</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2r53 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2r53 OCA], [https://pdbe.org/2r53 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2r53 RCSB], [https://www.ebi.ac.uk/pdbsum/2r53 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2r53 ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/BMP6_HUMAN BMP6_HUMAN] Induces cartilage and bone formation.
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/r5/2r53_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2r53 ConSurf].
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<div style="clear:both"></div>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Bone morphogenetic proteins (BMPs), together with transforming growth factor (TGF)-beta and activins/inhibins, constitute the TGF-beta superfamily of ligands. This superfamily is formed by more than 30 structurally related secreted proteins. The crystal structure of human BMP-6 was determined to a resolution of 2.1 A; the overall structure is similar to that of other TGF-beta superfamily ligands, e.g. BMP-7. The asymmetric unit contains the full dimeric BMP-6, indicating possible asymmetry between the two monomeric subunits. Indeed, the conformation of several loops differs between both monomers. In particular, the prehelix loop, which plays a crucial role in the type I receptor interactions of BMP-2, adopts two rather different conformations in BMP-6, indicating possible dynamic flexibility of the prehelix loop in its unbound conformation. Flexibility of this loop segment has been discussed as an important feature required for promiscuous binding of different type I receptors to BMPs. Further studies investigating the interaction of BMP-6 with different ectodomains of type I receptors revealed that N-glycosylation at Asn73 of BMP-6 in the wrist epitope is crucial for recognition by the activin receptor type I. In the absence of the carbohydrate moiety, activin receptor type I-mediated signaling of BMP-6 is totally diminished. Thus, flexibility within the binding epitope of BMP-6 and an unusual recognition motif, i.e. an N-glycosylation motif, possibly play an important role in type I receptor specificity of BMP-6.
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===Crystal structure analysis of Bone Morphogenetic Protein-6 variant B2 (B2-BMP-6)===
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Type I receptor binding of bone morphogenetic protein 6 is dependent on N-glycosylation of the ligand.,Saremba S, Nickel J, Seher A, Kotzsch A, Sebald W, Mueller TD FEBS J. 2008 Jan;275(1):172-83. Epub 2007 Dec 6. PMID:18070108<ref>PMID:18070108</ref>
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{{ABSTRACT_PUBMED_18070108}}
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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<div class="pdbe-citations 2r53" style="background-color:#fffaf0;"></div>
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==About this Structure==
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==See Also==
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[[2r53]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2R53 OCA].
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*[[Bone morphogenetic protein 3D structures|Bone morphogenetic protein 3D structures]]
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== References ==
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==Reference==
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<references/>
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<ref group="xtra">PMID:018070108</ref><references group="xtra"/>
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__TOC__
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</StructureSection>
[[Category: Homo sapiens]]
[[Category: Homo sapiens]]
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[[Category: Mueller, T D.]]
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[[Category: Large Structures]]
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[[Category: Sebald, W.]]
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[[Category: Mueller TD]]
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[[Category: Bmp6]]
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[[Category: Sebald W]]
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[[Category: Chondrogenesis]]
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[[Category: Cleavage on pair of basic residue]]
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[[Category: Cytokine]]
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[[Category: Developmental protein]]
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[[Category: Differentiation]]
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[[Category: Glycoprotein]]
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[[Category: Growth factor]]
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[[Category: Osteogenesis]]
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[[Category: Secreted]]
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[[Category: Tgf-beta ligand]]
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[[Category: Vgr]]
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Current revision

Crystal structure analysis of Bone Morphogenetic Protein-6 variant B2 (B2-BMP-6)

PDB ID 2r53

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