This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2ysk

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
m (Protected "2ysk" [edit=sysop:move=sysop])
Current revision (13:54, 13 March 2024) (edit) (undo)
 
(5 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:2ysk.png|left|200px]]
 
-
{{STRUCTURE_2ysk| PDB=2ysk | SCENE= }}
+
==Crystal structure of a hypothetical protein TTHA1432 from Thermus thermophilus==
-
 
+
<StructureSection load='2ysk' size='340' side='right'caption='[[2ysk]], [[Resolution|resolution]] 1.90&Aring;' scene=''>
-
===Crystal structure of a hypothetical protein TTHA1432 from Thermus thermophilus===
+
== Structural highlights ==
-
 
+
<table><tr><td colspan='2'>[[2ysk]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermus_thermophilus_HB8 Thermus thermophilus HB8]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2YSK OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2YSK FirstGlance]. <br>
-
 
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.9&#8491;</td></tr>
-
==About this Structure==
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-
[[2ysk]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Thermus_thermophilus Thermus thermophilus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2YSK OCA].
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2ysk FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2ysk OCA], [https://pdbe.org/2ysk PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2ysk RCSB], [https://www.ebi.ac.uk/pdbsum/2ysk PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2ysk ProSAT], [https://www.topsan.org/Proteins/RSGI/2ysk TOPSAN]</span></td></tr>
-
[[Category: Thermus thermophilus]]
+
</table>
-
[[Category: Kuramitsu, S.]]
+
== Function ==
-
[[Category: Okamoto, A.]]
+
[https://www.uniprot.org/uniprot/Q5SIE2_THET8 Q5SIE2_THET8]
-
[[Category: RSGI, RIKEN Structural Genomics/Proteomics Initiative.]]
+
== Evolutionary Conservation ==
-
[[Category: Yokoyama, S.]]
+
[[Image:Consurf_key_small.gif|200px|right]]
-
[[Category: Conserved hypothetical]]
+
Check<jmol>
-
[[Category: National project on protein structural and functional analyse]]
+
<jmolCheckbox>
-
[[Category: Nppsfa]]
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ys/2ysk_consurf.spt"</scriptWhenChecked>
-
[[Category: Riken structural genomics/proteomics initiative]]
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
[[Category: Rsgi]]
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: Structural genomic]]
+
</jmolCheckbox>
-
[[Category: Unknown function]]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2ysk ConSurf].
 +
<div style="clear:both"></div>
 +
__TOC__
 +
</StructureSection>
 +
[[Category: Large Structures]]
 +
[[Category: Thermus thermophilus HB8]]
 +
[[Category: Kuramitsu S]]
 +
[[Category: Okamoto A]]
 +
[[Category: Yokoyama S]]

Current revision

Crystal structure of a hypothetical protein TTHA1432 from Thermus thermophilus

PDB ID 2ysk

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools