This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2rh6

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (11:57, 30 August 2023) (edit) (undo)
 
(7 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:2rh6.png|left|200px]]
 
-
{{STRUCTURE_2rh6| PDB=2rh6 | SCENE= }}
+
==Structure of Xac NPP for evaluation of refinement methodology==
-
 
+
<StructureSection load='2rh6' size='340' side='right'caption='[[2rh6]], [[Resolution|resolution]] 1.45&Aring;' scene=''>
-
===Structure of Xac NPP for evaluation of refinement methodology===
+
== Structural highlights ==
-
 
+
<table><tr><td colspan='2'>[[2rh6]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Xanthomonas_citri_pv._citri_str._306 Xanthomonas citri pv. citri str. 306]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2RH6 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2RH6 FirstGlance]. <br>
-
{{ABSTRACT_PUBMED_16893180}}
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.45&#8491;</td></tr>
-
 
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=AMP:ADENOSINE+MONOPHOSPHATE'>AMP</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
-
==About this Structure==
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2rh6 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2rh6 OCA], [https://pdbe.org/2rh6 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2rh6 RCSB], [https://www.ebi.ac.uk/pdbsum/2rh6 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2rh6 ProSAT]</span></td></tr>
-
[[2rh6]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Xanthomonas_citri Xanthomonas citri]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2RH6 OCA].
+
</table>
-
 
+
== Function ==
-
==Reference==
+
[https://www.uniprot.org/uniprot/Q8PIS1_XANAC Q8PIS1_XANAC]
-
<ref group="xtra">PMID:016893180</ref><references group="xtra"/>
+
== Evolutionary Conservation ==
-
[[Category: Nucleotide diphosphatase]]
+
[[Image:Consurf_key_small.gif|200px|right]]
-
[[Category: Xanthomonas citri]]
+
Check<jmol>
-
[[Category: Brunger, A T.]]
+
<jmolCheckbox>
-
[[Category: Fenn, T D.]]
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/rh/2rh6_consurf.spt"</scriptWhenChecked>
-
[[Category: Hershlag, D.]]
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
[[Category: Zalatan, J G.]]
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: Hydrolase]]
+
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2rh6 ConSurf].
 +
<div style="clear:both"></div>
 +
__TOC__
 +
</StructureSection>
 +
[[Category: Large Structures]]
 +
[[Category: Xanthomonas citri pv. citri str. 306]]
 +
[[Category: Brunger AT]]
 +
[[Category: Fenn TD]]
 +
[[Category: Hershlag D]]
 +
[[Category: Zalatan JG]]

Current revision

Structure of Xac NPP for evaluation of refinement methodology

PDB ID 2rh6

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools