This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3afk

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (14:00, 13 March 2024) (edit) (undo)
 
(7 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:3afk.png|left|200px]]
 
-
{{STRUCTURE_3afk| PDB=3afk | SCENE= }}
+
==Crystal Structure of Agrocybe aegerita lectin AAL complexed with Thomsen-Friedenreich antigen==
-
 
+
<StructureSection load='3afk' size='340' side='right'caption='[[3afk]], [[Resolution|resolution]] 1.95&Aring;' scene=''>
-
===Crystal Structure of Agrocybe aegerita lectin AAL complexed with Thomsen-Friedenreich antigen===
+
== Structural highlights ==
-
 
+
<table><tr><td colspan='2'>[[3afk]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Cyclocybe_aegerita Cyclocybe aegerita]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3AFK OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3AFK FirstGlance]. <br>
-
{{ABSTRACT_PUBMED_20530247}}
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.95&#8491;</td></tr>
-
 
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=A2G:N-ACETYL-2-DEOXY-2-AMINO-GALACTOSE'>A2G</scene>, <scene name='pdbligand=GAL:BETA-D-GALACTOSE'>GAL</scene>, <scene name='pdbligand=PRD_900084:Thomsen-Friedenreich+antigen'>PRD_900084</scene>, <scene name='pdbligand=THR:THREONINE'>THR</scene></td></tr>
-
==About this Structure==
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3afk FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3afk OCA], [https://pdbe.org/3afk PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3afk RCSB], [https://www.ebi.ac.uk/pdbsum/3afk PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3afk ProSAT]</span></td></tr>
-
[[3afk]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Agrocybe_aegerita Agrocybe aegerita]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3AFK OCA].
+
</table>
-
 
+
== Function ==
-
==Reference==
+
[https://www.uniprot.org/uniprot/ATLE_CYCAE ATLE_CYCAE] Anti-tumor lectin with DNase activity. Inhibits the growth of several tumor cell lines in vitro. Induces lymphocyte infiltration and necrosis of tumor cells in a mouse tumor model. Induces apoptosis in HeLa cells. Binds N-acetylneuraminyl lactose (N-acetyl-alpha-neuraminyl-(2->3)-beta-D-galactosyl-(1->4)-beta-D-glucose) (PubMed:16051274).<ref>PMID:12757412</ref> <ref>PMID:16051274</ref>
-
<ref group="xtra">PMID:020530247</ref><references group="xtra"/>
+
== References ==
-
[[Category: Agrocybe aegerita]]
+
<references/>
-
[[Category: Feng, L.]]
+
__TOC__
-
[[Category: Li, D.]]
+
</StructureSection>
-
[[Category: Wang, D.]]
+
[[Category: Cyclocybe aegerita]]
-
[[Category: 3-galnac-alpha-o-thr]]
+
[[Category: Large Structures]]
-
[[Category: Aal]]
+
[[Category: Feng L]]
-
[[Category: Apoptosis]]
+
[[Category: Li D]]
-
[[Category: Gal-beta-1]]
+
[[Category: Wang D]]
-
[[Category: Galectin]]
+
-
[[Category: Hydrolase]]
+
-
[[Category: Lectin]]
+
-
[[Category: Nuclease]]
+
-
[[Category: Thomsen-friedenreich antigen]]
+

Current revision

Crystal Structure of Agrocybe aegerita lectin AAL complexed with Thomsen-Friedenreich antigen

PDB ID 3afk

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools