3c8m

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (07:47, 27 January 2022) (edit) (undo)
 
(5 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:3c8m.png|left|200px]]
 
-
{{STRUCTURE_3c8m| PDB=3c8m | SCENE= }}
+
==Crystal structure of homoserine dehydrogenase from Thermoplasma volcanium==
-
 
+
<StructureSection load='3c8m' size='340' side='right'caption='[[3c8m]], [[Resolution|resolution]] 1.90&Aring;' scene=''>
-
===Crystal structure of homoserine dehydrogenase from Thermoplasma volcanium===
+
== Structural highlights ==
-
 
+
<table><tr><td colspan='2'>[[3c8m]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Thevo Thevo]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3C8M OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3C8M FirstGlance]. <br>
-
 
+
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-
==About this Structure==
+
<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-
[[3c8m]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Thermoplasma_volcanium_gss1 Thermoplasma volcanium gss1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3C8M OCA].
+
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">TVG0375766, TV0389 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=273116 THEVO])</td></tr>
-
[[Category: Thermoplasma volcanium gss1]]
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3c8m FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3c8m OCA], [https://pdbe.org/3c8m PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3c8m RCSB], [https://www.ebi.ac.uk/pdbsum/3c8m PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3c8m ProSAT], [https://www.topsan.org/Proteins/MCSG/3c8m TOPSAN]</span></td></tr>
-
[[Category: Abdullah, J.]]
+
</table>
-
[[Category: Hendricks, R.]]
+
== Evolutionary Conservation ==
-
[[Category: Joachimiak, A.]]
+
[[Image:Consurf_key_small.gif|200px|right]]
-
[[Category: MCSG, Midwest Center for Structural Genomics.]]
+
Check<jmol>
-
[[Category: Osipiuk, J.]]
+
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/c8/3c8m_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3c8m ConSurf].
 +
<div style="clear:both"></div>
 +
__TOC__
 +
</StructureSection>
 +
[[Category: Large Structures]]
 +
[[Category: Thevo]]
 +
[[Category: Abdullah, J]]
 +
[[Category: Hendricks, R]]
 +
[[Category: Joachimiak, A]]
 +
[[Category: Structural genomic]]
 +
[[Category: Osipiuk, J]]
[[Category: Apc89447]]
[[Category: Apc89447]]
[[Category: Dehydrogenase]]
[[Category: Dehydrogenase]]
[[Category: Homoserine]]
[[Category: Homoserine]]
[[Category: Mcsg]]
[[Category: Mcsg]]
-
[[Category: Midwest center for structural genomic]]
 
[[Category: Oxidoreductase]]
[[Category: Oxidoreductase]]
-
[[Category: Protein structure initiative]]
+
[[Category: PSI, Protein structure initiative]]
-
[[Category: Psi-2]]
+
-
[[Category: Structural genomic]]
+

Current revision

Crystal structure of homoserine dehydrogenase from Thermoplasma volcanium

PDB ID 3c8m

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools