2qeh

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (08:17, 25 June 2021) (edit) (undo)
 
(5 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:2qeh.png|left|200px]]
 
-
{{STRUCTURE_2qeh| PDB=2qeh | SCENE= }}
+
==Crystal Structure of Anopheles gambiae D7r4-serotonin complex==
 +
<StructureSection load='2qeh' size='340' side='right'caption='[[2qeh]], [[Resolution|resolution]] 2.10&Aring;' scene=''>
 +
== Structural highlights ==
 +
<table><tr><td colspan='2'>[[2qeh]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Anoga Anoga]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2QEH OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2QEH FirstGlance]. <br>
 +
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=SRO:SEROTONIN'>SRO</scene></td></tr>
 +
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[2qeb|2qeb]], [[2qeo|2qeo]], [[2qev|2qev]]</div></td></tr>
 +
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">D7r4 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=7165 ANOGA])</td></tr>
 +
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2qeh FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2qeh OCA], [https://pdbe.org/2qeh PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2qeh RCSB], [https://www.ebi.ac.uk/pdbsum/2qeh PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2qeh ProSAT]</span></td></tr>
 +
</table>
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/qe/2qeh_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2qeh ConSurf].
 +
<div style="clear:both"></div>
 +
<div style="background-color:#fffaf0;">
 +
== Publication Abstract from PubMed ==
 +
The D7-related (D7r) proteins of the malaria vector Anopheles gambiae have been shown to bind the biogenic amines serotonin, norepinephrine, and histamine with high affinity. One member of the group (D7r1 or hamadarin) has also been shown to have an anticoagulant/antikinin activity. To understand the mechanistic details of its antihemostatic/anti-inflammatory effects, we have determined the crystal structure of one member of this group, D7r4, along with the structures of ligand complexes with serotonin, tryptamine, histamine, and norepinephrine. The D7 fold consists of an arrangement of eight alpha-helices stabilized by three disulfide bonds. The structure is similar to those of the arthropod odorant-binding proteins, a relationship that had been predicted based on sequence comparisons. Although odorant-binding proteins commonly have six alpha-helices, D7r4 has eight, resulting in significantly different positioning and structure of the ligand binding pocket. The pocket itself is lined by hydrophobic side chains along with polar and charged groups oriented to form hydrogen bonds with the aliphatic amino group and with groups on the aromatic portions of the ligands. These structures, along with accompanying mutagenesis studies, have allowed us to identify critical residues for biogenic amine binding and to predict which members of the large D7 protein family found in blood-feeding nematocerous Diptera will function as biogenic amine-binding proteins.
-
===Crystal Structure of Anopheles gambiae D7r4-serotonin complex===
+
The crystal structure of D7r4, a salivary biogenic amine-binding protein from the malaria mosquito Anopheles gambiae.,Mans BJ, Calvo E, Ribeiro JM, Andersen JF J Biol Chem. 2007 Dec 14;282(50):36626-33. Epub 2007 Oct 9. PMID:17928288<ref>PMID:17928288</ref>
-
{{ABSTRACT_PUBMED_17928288}}
+
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
-
 
+
</div>
-
==About this Structure==
+
<div class="pdbe-citations 2qeh" style="background-color:#fffaf0;"></div>
-
[[2qeh]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Anopheles_gambiae Anopheles gambiae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2QEH OCA].
+
== References ==
-
 
+
<references/>
-
==Reference==
+
__TOC__
-
<ref group="xtra">PMID:017928288</ref><references group="xtra"/>
+
</StructureSection>
-
[[Category: Anopheles gambiae]]
+
[[Category: Anoga]]
-
[[Category: Andersen, J F.]]
+
[[Category: Large Structures]]
-
[[Category: Calvo, E.]]
+
[[Category: Andersen, J F]]
-
[[Category: Mans, B J.]]
+
[[Category: Calvo, E]]
-
[[Category: Ribeiro, J M.]]
+
[[Category: Mans, B J]]
 +
[[Category: Ribeiro, J M]]
[[Category: All-helical]]
[[Category: All-helical]]
[[Category: Ligand binding protein]]
[[Category: Ligand binding protein]]
[[Category: Odorant-binding protein]]
[[Category: Odorant-binding protein]]

Current revision

Crystal Structure of Anopheles gambiae D7r4-serotonin complex

PDB ID 2qeh

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools