This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3bdi

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
m (Protected "3bdi" [edit=sysop:move=sysop])
Current revision (06:51, 25 January 2023) (edit) (undo)
 
(6 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:3bdi.png|left|200px]]
 
-
{{STRUCTURE_3bdi| PDB=3bdi | SCENE= }}
+
==Crystal structure of predicted CIB-like hydrolase (NP_393672.1) from Thermoplasma acidophilum at 1.45 A resolution==
-
 
+
<StructureSection load='3bdi' size='340' side='right'caption='[[3bdi]], [[Resolution|resolution]] 1.45&Aring;' scene=''>
-
===Crystal structure of predicted CIB-like hydrolase (NP_393672.1) from Thermoplasma acidophilum at 1.45 A resolution===
+
== Structural highlights ==
-
 
+
<table><tr><td colspan='2'>[[3bdi]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermoplasma_acidophilum_DSM_1728 Thermoplasma acidophilum DSM 1728]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3BDI OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3BDI FirstGlance]. <br>
-
 
+
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=PEG:DI(HYDROXYETHYL)ETHER'>PEG</scene></td></tr>
-
==About this Structure==
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3bdi FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3bdi OCA], [https://pdbe.org/3bdi PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3bdi RCSB], [https://www.ebi.ac.uk/pdbsum/3bdi PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3bdi ProSAT], [https://www.topsan.org/Proteins/JCSG/3bdi TOPSAN]</span></td></tr>
-
[[3bdi]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Thermoplasma_acidophilum_dsm_1728 Thermoplasma acidophilum dsm 1728]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3BDI OCA].
+
</table>
-
[[Category: Thermoplasma acidophilum dsm 1728]]
+
== Function ==
-
[[Category: JCSG, Joint Center for Structural Genomics.]]
+
[https://www.uniprot.org/uniprot/Q9HLN3_THEAC Q9HLN3_THEAC]
-
[[Category: Hydrolase]]
+
== Evolutionary Conservation ==
-
[[Category: Jcsg]]
+
[[Image:Consurf_key_small.gif|200px|right]]
-
[[Category: Joint center for structural genomic]]
+
Check<jmol>
-
[[Category: Np_393672 1]]
+
<jmolCheckbox>
-
[[Category: Predicted cib-like hydrolase]]
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/bd/3bdi_consurf.spt"</scriptWhenChecked>
-
[[Category: Protein structure initiative]]
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
[[Category: Psi-2]]
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: Structural genomic]]
+
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3bdi ConSurf].
 +
<div style="clear:both"></div>
 +
__TOC__
 +
</StructureSection>
 +
[[Category: Large Structures]]
 +
[[Category: Thermoplasma acidophilum DSM 1728]]

Current revision

Crystal structure of predicted CIB-like hydrolase (NP_393672.1) from Thermoplasma acidophilum at 1.45 A resolution

PDB ID 3bdi

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools