This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2qvp

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (06:50, 25 January 2023) (edit) (undo)
 
(8 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:2qvp.png|left|200px]]
 
-
{{STRUCTURE_2qvp| PDB=2qvp | SCENE= }}
+
==CRYSTAL STRUCTURE OF A PUTATIVE METALLOPEPTIDASE (SAMA_0725) FROM SHEWANELLA AMAZONENSIS SB2B AT 2.00 A RESOLUTION==
-
 
+
<StructureSection load='2qvp' size='340' side='right'caption='[[2qvp]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
-
===CRYSTAL STRUCTURE OF A PUTATIVE METALLOPEPTIDASE (SAMA_0725) FROM SHEWANELLA AMAZONENSIS SB2B AT 2.00 A RESOLUTION===
+
== Structural highlights ==
-
 
+
<table><tr><td colspan='2'>[[2qvp]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Shewanella_amazonensis_SB2B Shewanella amazonensis SB2B]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2QVP OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2QVP FirstGlance]. <br>
-
 
+
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-
==About this Structure==
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2qvp FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2qvp OCA], [https://pdbe.org/2qvp PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2qvp RCSB], [https://www.ebi.ac.uk/pdbsum/2qvp PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2qvp ProSAT], [https://www.topsan.org/Proteins/JCSG/2qvp TOPSAN]</span></td></tr>
-
[[2qvp]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/Shewanella_amazonensis Shewanella amazonensis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2QVP OCA].
+
</table>
-
[[Category: Shewanella amazonensis]]
+
== Function ==
-
[[Category: JCSG, Joint Center for Structural Genomics.]]
+
[https://www.uniprot.org/uniprot/A1S3H7_SHEAM A1S3H7_SHEAM]
-
[[Category: Hydrolase]]
+
== Evolutionary Conservation ==
-
[[Category: Jcsg]]
+
[[Image:Consurf_key_small.gif|200px|right]]
-
[[Category: Joint center for structural genomic]]
+
Check<jmol>
-
[[Category: Protein structure initiative]]
+
<jmolCheckbox>
-
[[Category: Psi-2]]
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/qv/2qvp_consurf.spt"</scriptWhenChecked>
-
[[Category: Putative metallopeptidase]]
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
[[Category: Structural genomic]]
+
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2qvp ConSurf].
 +
<div style="clear:both"></div>
 +
__TOC__
 +
</StructureSection>
 +
[[Category: Large Structures]]
 +
[[Category: Shewanella amazonensis SB2B]]

Current revision

CRYSTAL STRUCTURE OF A PUTATIVE METALLOPEPTIDASE (SAMA_0725) FROM SHEWANELLA AMAZONENSIS SB2B AT 2.00 A RESOLUTION

PDB ID 2qvp

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools