This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.
Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.
2ywq
From Proteopedia
(Difference between revisions)
| (5 intermediate revisions not shown.) | |||
| Line 1: | Line 1: | ||
| - | [[Image:2ywq.png|left|200px]] | ||
| - | + | ==Crystal structure of Thermus thermophilus Protein Y N-terminal domain== | |
| - | + | <StructureSection load='2ywq' size='340' side='right'caption='[[2ywq]], [[Resolution|resolution]] 2.64Å' scene=''> | |
| - | + | == Structural highlights == | |
| - | + | <table><tr><td colspan='2'>[[2ywq]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Thet8 Thet8]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2YWQ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2YWQ FirstGlance]. <br> | |
| - | + | </td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr> | |
| - | == | + | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">TTHA1294 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=300852 THET8])</td></tr> |
| - | [[2ywq]] is a 4 chain structure with sequence from [ | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2ywq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2ywq OCA], [https://pdbe.org/2ywq PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2ywq RCSB], [https://www.ebi.ac.uk/pdbsum/2ywq PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2ywq ProSAT], [https://www.topsan.org/Proteins/RSGI/2ywq TOPSAN]</span></td></tr> |
| - | [[Category: | + | </table> |
| - | [[Category: Kaminishi, T | + | == Evolutionary Conservation == |
| - | [[Category: Kawazoe, M | + | [[Image:Consurf_key_small.gif|200px|right]] |
| - | [[Category: | + | Check<jmol> |
| - | [[Category: Saito, Y | + | <jmolCheckbox> |
| - | [[Category: Shirouzu, M | + | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/yw/2ywq_consurf.spt"</scriptWhenChecked> |
| - | [[Category: Takemoto, C | + | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> |
| - | [[Category: Tatsuguchi, A | + | <text>to colour the structure by Evolutionary Conservation</text> |
| - | [[Category: Yokoyama, S | + | </jmolCheckbox> |
| + | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2ywq ConSurf]. | ||
| + | <div style="clear:both"></div> | ||
| + | __TOC__ | ||
| + | </StructureSection> | ||
| + | [[Category: Large Structures]] | ||
| + | [[Category: Thet8]] | ||
| + | [[Category: Kaminishi, T]] | ||
| + | [[Category: Kawazoe, M]] | ||
| + | [[Category: Structural genomic]] | ||
| + | [[Category: Saito, Y]] | ||
| + | [[Category: Shirouzu, M]] | ||
| + | [[Category: Takemoto, C]] | ||
| + | [[Category: Tatsuguchi, A]] | ||
| + | [[Category: Yokoyama, S]] | ||
[[Category: National project on protein structural and functional analyse]] | [[Category: National project on protein structural and functional analyse]] | ||
[[Category: Nppsfa]] | [[Category: Nppsfa]] | ||
[[Category: Ribosomal protein]] | [[Category: Ribosomal protein]] | ||
| - | [[Category: Riken structural genomics/proteomics initiative]] | ||
[[Category: Rsgi]] | [[Category: Rsgi]] | ||
[[Category: Sigma-54 modulation protein family]] | [[Category: Sigma-54 modulation protein family]] | ||
| - | [[Category: Structural genomic]] | ||
Current revision
Crystal structure of Thermus thermophilus Protein Y N-terminal domain
| |||||||||||

