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1h6n

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[[Image:1h6n.gif|left|200px]]<br />
 
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<applet load="1h6n" size="450" color="white" frame="true" align="right" spinBox="true"
 
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caption="1h6n, resolution 2.11&Aring;" />
 
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'''FORMATION OF A TYROSYL RADICAL INTERMEDIATE IN PROTEUS MIRABILIS CATALASE BY DIRECTED MUTAGENESIS AND CONSEQUENCES FOR NUCLEOTIDE REACTIVITY'''<br />
 
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==Overview==
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==Formation of a tyrosyl radical intermediate in Proteus mirabilis catalase by directed mutagenesis and consequences for nucleotide reactivity==
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Heme catalases are homotetrameric enzymes with a highly conserved complex, quaternary structure, and their functional role is still not well, understood. Proteus mirabilis catalase (PMC), a heme enzyme belonging to, the family of NADPH-binding catalases, was efficiently overexpressed in E., coli. The recombinant catalase (rec PMC) was deficient in heme with, one-third heme and two-thirds protoporphyrin IX as determined by mass, spectrometry and chemical methods. This ratio was influenced by the, expression conditions, but the enzyme-specific activity calculated, relative to the heme content remained unchanged. The crystal structure of, rec PMC was solved to a resolution of 2.0 A, the highest resolution, obtained to date with PMC. The overall structure was quite similar to that, of ... [[http://ispc.weizmann.ac.il/pmbin/getpm?12486720 (full description)]]
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<StructureSection load='1h6n' size='340' side='right'caption='[[1h6n]], [[Resolution|resolution]] 2.11&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[1h6n]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Proteus_mirabilis Proteus mirabilis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1H6N OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1H6N FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.11&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene>, <scene name='pdbligand=OMT:S-DIOXYMETHIONINE'>OMT</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1h6n FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1h6n OCA], [https://pdbe.org/1h6n PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1h6n RCSB], [https://www.ebi.ac.uk/pdbsum/1h6n PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1h6n ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/CATA_PROMI CATA_PROMI] Decomposes hydrogen peroxide into water and oxygen; serves to protect cells from the toxic effects of hydrogen peroxide.
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/h6/1h6n_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1h6n ConSurf].
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<div style="clear:both"></div>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Heme catalases are homotetrameric enzymes with a highly conserved complex quaternary structure, and their functional role is still not well understood. Proteus mirabilis catalase (PMC), a heme enzyme belonging to the family of NADPH-binding catalases, was efficiently overexpressed in E. coli. The recombinant catalase (rec PMC) was deficient in heme with one-third heme and two-thirds protoporphyrin IX as determined by mass spectrometry and chemical methods. This ratio was influenced by the expression conditions, but the enzyme-specific activity calculated relative to the heme content remained unchanged. The crystal structure of rec PMC was solved to a resolution of 2.0 A, the highest resolution obtained to date with PMC. The overall structure was quite similar to that of wild-type PMC, and it is surprising that the absence of iron had no effect on the structure of the active site. Met 53 close to the essential His 54 was found less oxidized in rec PMC than in the wild-type enzyme. An acetate anion was modeled in an anionic pocket, away from the heme group but important for the enzymatic reaction. An alternate conformation observed for Arg 99 could play a role in the formation of the H-bond network connecting two symmetrical subunits of the tetramer.
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==About this Structure==
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High-resolution structure and biochemical properties of a recombinant Proteus mirabilis catalase depleted in iron.,Andreoletti P, Sainz G, Jaquinod M, Gagnon J, Jouve HM Proteins. 2003 Feb 1;50(2):261-71. PMID:12486720<ref>PMID:12486720</ref>
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1H6N is a [[http://en.wikipedia.org/wiki/Single_protein Single protein]] structure of sequence from [[http://en.wikipedia.org/wiki/Proteus_mirabilis Proteus mirabilis]] with ACT, SO4 and HEM as [[http://en.wikipedia.org/wiki/ligands ligands]]. Active as [[http://en.wikipedia.org/wiki/Catalase Catalase]], with EC number [[http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.11.1.6 1.11.1.6]]. Structure known Active Site: HEM. Full crystallographic information is available from [[http://ispc.weizmann.ac.il/oca-bin/ocashort?id=1H6N OCA]].
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==Reference==
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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High-resolution structure and biochemical properties of a recombinant Proteus mirabilis catalase depleted in iron., Andreoletti P, Sainz G, Jaquinod M, Gagnon J, Jouve HM, Proteins. 2003 Feb 1;50(2):261-71. PMID:[http://ispc.weizmann.ac.il//pmbin/getpm?pmid=12486720 12486720]
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</div>
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[[Category: Catalase]]
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<div class="pdbe-citations 1h6n" style="background-color:#fffaf0;"></div>
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[[Category: Proteus mirabilis]]
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[[Category: Single protein]]
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[[Category: Andreoletti, P.]]
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[[Category: Gagnon, J.]]
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[[Category: Jaquinod, M.]]
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[[Category: Jouve, H.M.]]
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[[Category: Sainz, G.]]
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[[Category: ACT]]
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[[Category: HEM]]
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[[Category: SO4]]
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[[Category: hem]]
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[[Category: hydrogen peroxide]]
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[[Category: iron]]
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[[Category: nadp]]
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[[Category: oxidoreductase (h2o2 acceptor)]]
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[[Category: peroxidase]]
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''Page seeded by [http://ispc.weizmann.ac.il/oca OCA ] on Tue Oct 30 15:30:38 2007''
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==See Also==
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*[[Catalase 3D structures|Catalase 3D structures]]
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== References ==
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<references/>
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__TOC__
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</StructureSection>
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[[Category: Large Structures]]
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[[Category: Proteus mirabilis]]
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[[Category: Andreoletti P]]
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[[Category: Gagnon J]]
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[[Category: Jaquinod M]]
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[[Category: Jouve HM]]
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[[Category: Sainz G]]

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Formation of a tyrosyl radical intermediate in Proteus mirabilis catalase by directed mutagenesis and consequences for nucleotide reactivity

PDB ID 1h6n

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