This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3cne

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (08:02, 27 January 2022) (edit) (undo)
 
(5 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:3cne.png|left|200px]]
 
-
{{STRUCTURE_3cne| PDB=3cne | SCENE= }}
+
==Crystal structure of the putative protease I from Bacteroides thetaiotaomicron==
-
 
+
<StructureSection load='3cne' size='340' side='right'caption='[[3cne]], [[Resolution|resolution]] 1.99&Aring;' scene=''>
-
===Crystal structure of the putative protease I from Bacteroides thetaiotaomicron===
+
== Structural highlights ==
-
 
+
<table><tr><td colspan='2'>[[3cne]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Bactn Bactn]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3CNE OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3CNE FirstGlance]. <br>
-
 
+
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=FMN:FLAVIN+MONONUCLEOTIDE'>FMN</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
-
==About this Structure==
+
<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-
[[3cne]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Bacteroides_thetaiotaomicron_vpi-5482 Bacteroides thetaiotaomicron vpi-5482]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3CNE OCA].
+
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">GI:29338570, BT_1263 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=226186 BACTN])</td></tr>
-
[[Category: Bacteroides thetaiotaomicron vpi-5482]]
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3cne FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3cne OCA], [https://pdbe.org/3cne PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3cne RCSB], [https://www.ebi.ac.uk/pdbsum/3cne PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3cne ProSAT], [https://www.topsan.org/Proteins/MCSG/3cne TOPSAN]</span></td></tr>
-
[[Category: Abdullah, J.]]
+
</table>
-
[[Category: Joachimiak, A.]]
+
== Evolutionary Conservation ==
-
[[Category: MCSG, Midwest Center for Structural Genomics.]]
+
[[Image:Consurf_key_small.gif|200px|right]]
-
[[Category: Volkart, L.]]
+
Check<jmol>
-
[[Category: Zhang, R.]]
+
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/cn/3cne_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3cne ConSurf].
 +
<div style="clear:both"></div>
 +
__TOC__
 +
</StructureSection>
 +
[[Category: Bactn]]
 +
[[Category: Large Structures]]
 +
[[Category: Abdullah, J]]
 +
[[Category: Joachimiak, A]]
 +
[[Category: Structural genomic]]
 +
[[Category: Volkart, L]]
 +
[[Category: Zhang, R]]
[[Category: Hydrolase]]
[[Category: Hydrolase]]
[[Category: Mcsg]]
[[Category: Mcsg]]
-
[[Category: Midwest center for structural genomic]]
 
[[Category: Protease i]]
[[Category: Protease i]]
-
[[Category: Protein structure initiative]]
+
[[Category: PSI, Protein structure initiative]]
-
[[Category: Psi-2]]
+
-
[[Category: Structural genomic]]
+

Current revision

Crystal structure of the putative protease I from Bacteroides thetaiotaomicron

PDB ID 3cne

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools