3d8m

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (15:04, 1 November 2023) (edit) (undo)
 
(5 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:3d8m.png|left|200px]]
 
-
{{STRUCTURE_3d8m| PDB=3d8m | SCENE= }}
+
==Crystal structure of a chimeric receptor binding protein from lactococcal phages subspecies TP901-1 and p2==
 +
<StructureSection load='3d8m' size='340' side='right'caption='[[3d8m]], [[Resolution|resolution]] 3.35&Aring;' scene=''>
 +
== Structural highlights ==
 +
<table><tr><td colspan='2'>[[3d8m]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Lactococcus_phage_TP901-1 Lactococcus phage TP901-1] and [https://en.wikipedia.org/wiki/Lactococcus_virus_P2 Lactococcus virus P2]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3D8M OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3D8M FirstGlance]. <br>
 +
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 3.35&#8491;</td></tr>
 +
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3d8m FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3d8m OCA], [https://pdbe.org/3d8m PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3d8m RCSB], [https://www.ebi.ac.uk/pdbsum/3d8m PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3d8m ProSAT]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/Q9G096_9CAUD Q9G096_9CAUD]
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/d8/3d8m_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3d8m ConSurf].
 +
<div style="clear:both"></div>
 +
<div style="background-color:#fffaf0;">
 +
== Publication Abstract from PubMed ==
 +
Lactococcus lactis, a gram-positive bacterium widely used by the dairy industry to manufacture cheeses, is subject to infection by a diverse population of virulent phages. We have previously determined the structures of three receptor binding proteins (RBPs) from lactococcal phages TP901-1, p2, and bIL170, each of them having a distinct host range. Virulent phages p2 and bIL170 are classified within the 936 group, while the temperate phage TP901-1 is a member of the genetically distinct P335 polythetic group. These RBPs comprise three domains: the N-terminal domain, binding to the virion particle; a beta-helical linker domain; and the C-terminal domain, bearing the receptor binding site used for host recognition. Here, we have designed, expressed, and determined the structure of an RBP chimera in which the N-terminal and linker RBP domains of phage TP901-1 (P335) are fused to the C-terminal RBP domain of phage p2 (936). This chimera exhibits a stable structure that closely resembles the parental structures, while a slight displacement of the linker made RBP domain adaptation efficient. The receptor binding site is structurally indistinguishable from that of native p2 RBP and binds glycerol with excellent affinity.
-
===Crystal structure of a chimeric receptor binding protein from lactococcal phages subspecies TP901-1 and p2===
+
Crystal structure of a chimeric receptor binding protein constructed from two lactococcal phages.,Siponen M, Spinelli S, Blangy S, Moineau S, Cambillau C, Campanacci V J Bacteriol. 2009 May;191(10):3220-5. Epub 2009 Mar 13. PMID:19286807<ref>PMID:19286807</ref>
-
{{ABSTRACT_PUBMED_19286807}}
+
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
-
 
+
</div>
-
==About this Structure==
+
<div class="pdbe-citations 3d8m" style="background-color:#fffaf0;"></div>
-
[[3d8m]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Lactococcus_phage_tp901-1 Lactococcus phage tp901-1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3D8M OCA].
+
== References ==
-
 
+
<references/>
-
==Reference==
+
__TOC__
-
<ref group="xtra">PMID:019286807</ref><references group="xtra"/>
+
</StructureSection>
-
[[Category: Lactococcus phage tp901-1]]
+
[[Category: Lactococcus phage TP901-1]]
-
[[Category: Blangy, S.]]
+
[[Category: Lactococcus virus P2]]
-
[[Category: Cambillau, C.]]
+
[[Category: Large Structures]]
-
[[Category: Campanacci, V.]]
+
[[Category: Blangy S]]
-
[[Category: Siponen, M I.]]
+
[[Category: Cambillau C]]
-
[[Category: Spinelli, S.]]
+
[[Category: Campanacci V]]
-
[[Category: Lactococcal phage p2]]
+
[[Category: Siponen MI]]
-
[[Category: Lactococcal phage tp901-1]]
+
[[Category: Spinelli S]]
-
[[Category: Receptor binding protein]]
+
-
[[Category: Virus-viral protein complex]]
+

Current revision

Crystal structure of a chimeric receptor binding protein from lactococcal phages subspecies TP901-1 and p2

PDB ID 3d8m

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools