This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1y7b

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (08:55, 14 February 2024) (edit) (undo)
 
(13 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:1y7b.gif|left|200px]]<br /><applet load="1y7b" size="350" color="white" frame="true" align="right" spinBox="true"
 
-
caption="1y7b, resolution 1.60&Aring;" />
 
-
'''BETA-D-XYLOSIDASE, A FAMILY 43 GLYCOSIDE HYDROLASE'''<br />
 
-
==About this Structure==
+
==BETA-D-XYLOSIDASE, A FAMILY 43 GLYCOSIDE HYDROLASE==
-
1Y7B is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Clostridium_acetobutylicum_atcc_824 Clostridium acetobutylicum atcc 824] with <scene name='pdbligand=CA:'>CA</scene>, <scene name='pdbligand=SO4:'>SO4</scene>, <scene name='pdbligand=EPE:'>EPE</scene>, <scene name='pdbligand=PGE:'>PGE</scene> and <scene name='pdbligand=GOL:'>GOL</scene> as [http://en.wikipedia.org/wiki/ligands ligands]. Active as [http://en.wikipedia.org/wiki/Xylan_1,4-beta-xylosidase Xylan 1,4-beta-xylosidase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.37 3.2.1.37] Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1Y7B OCA].
+
<StructureSection load='1y7b' size='340' side='right'caption='[[1y7b]], [[Resolution|resolution]] 1.60&Aring;' scene=''>
-
[[Category: Clostridium acetobutylicum atcc 824]]
+
== Structural highlights ==
-
[[Category: Single protein]]
+
<table><tr><td colspan='2'>[[1y7b]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Clostridium_acetobutylicum_ATCC_824 Clostridium acetobutylicum ATCC 824]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1Y7B OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1Y7B FirstGlance]. <br>
-
[[Category: Xylan 1,4-beta-xylosidase]]
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.6&#8491;</td></tr>
-
[[Category: Almo, S C.]]
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=EPE:4-(2-HYDROXYETHYL)-1-PIPERAZINE+ETHANESULFONIC+ACID'>EPE</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=PGE:TRIETHYLENE+GLYCOL'>PGE</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-
[[Category: Burley, S K.]]
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1y7b FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1y7b OCA], [https://pdbe.org/1y7b PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1y7b RCSB], [https://www.ebi.ac.uk/pdbsum/1y7b PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1y7b ProSAT], [https://www.topsan.org/Proteins/NYSGXRC/1y7b TOPSAN]</span></td></tr>
-
[[Category: Fedorov, E.]]
+
</table>
-
[[Category: Gilliland, G L.]]
+
== Function ==
-
[[Category: NYSGXRC, New York Structural GenomiX Research Consortium.]]
+
[https://www.uniprot.org/uniprot/Q97DM1_CLOAB Q97DM1_CLOAB]
-
[[Category: Teplyakov, A.]]
+
== Evolutionary Conservation ==
-
[[Category: CA]]
+
[[Image:Consurf_key_small.gif|200px|right]]
-
[[Category: EPE]]
+
Check<jmol>
-
[[Category: GOL]]
+
<jmolCheckbox>
-
[[Category: PGE]]
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/y7/1y7b_consurf.spt"</scriptWhenChecked>
-
[[Category: SO4]]
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
[[Category: beta-propeller]]
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: beta-sandwich]]
+
</jmolCheckbox>
-
[[Category: new york structural genomix research consortium]]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1y7b ConSurf].
-
[[Category: nysgxrc]]
+
<div style="clear:both"></div>
-
[[Category: protein structure initative]]
+
-
[[Category: protein structure initiative]]
+
-
[[Category: psi]]
+
-
[[Category: structural genomics]]
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Feb 21 16:02:23 2008''
+
==See Also==
 +
*[[Xylosidase 3D structures|Xylosidase 3D structures]]
 +
__TOC__
 +
</StructureSection>
 +
[[Category: Clostridium acetobutylicum ATCC 824]]
 +
[[Category: Large Structures]]
 +
[[Category: Almo SC]]
 +
[[Category: Burley SK]]
 +
[[Category: Fedorov E]]
 +
[[Category: Gilliland GL]]
 +
[[Category: Teplyakov A]]

Current revision

BETA-D-XYLOSIDASE, A FAMILY 43 GLYCOSIDE HYDROLASE

PDB ID 1y7b

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/1y7b"
Personal tools