1y9b

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (00:41, 21 November 2024) (edit) (undo)
 
(15 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:1y9b.gif|left|200px]]<br /><applet load="1y9b" size="350" color="white" frame="true" align="right" spinBox="true"
 
-
caption="1y9b, resolution 2.20&Aring;" />
 
-
'''Structure of Conserved Putative Transcriptional Factor from Vibrio cholerae O1 biovar eltor str. N16961'''<br />
 
-
==About this Structure==
+
==Structure of Conserved Putative Transcriptional Factor from Vibrio cholerae O1 biovar eltor str. N16961==
-
1Y9B is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Vibrio_cholerae_o1_biovar_eltor_str._n16961 Vibrio cholerae o1 biovar eltor str. n16961]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1Y9B OCA].
+
<StructureSection load='1y9b' size='340' side='right'caption='[[1y9b]], [[Resolution|resolution]] 2.20&Aring;' scene=''>
-
[[Category: Single protein]]
+
== Structural highlights ==
-
[[Category: Vibrio cholerae o1 biovar eltor str. n16961]]
+
<table><tr><td colspan='2'>[[1y9b]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Vibrio_cholerae_O1_biovar_El_Tor_str._N16961 Vibrio cholerae O1 biovar El Tor str. N16961]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1Y9B OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1Y9B FirstGlance]. <br>
-
[[Category: Binkowski, T A.]]
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.2&#8491;</td></tr>
-
[[Category: Hatzos, C.]]
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-
[[Category: Joachimiak, A.]]
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1y9b FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1y9b OCA], [https://pdbe.org/1y9b PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1y9b RCSB], [https://www.ebi.ac.uk/pdbsum/1y9b PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1y9b ProSAT], [https://www.topsan.org/Proteins/MCSG/1y9b TOPSAN]</span></td></tr>
-
[[Category: MCSG, Midwest Center for Structural Genomics.]]
+
</table>
-
[[Category: Moy, S.]]
+
== Evolutionary Conservation ==
-
[[Category: Quartey, P.]]
+
[[Image:Consurf_key_small.gif|200px|right]]
-
[[Category: conserved hypothetical protein]]
+
Check<jmol>
-
[[Category: mcsg]]
+
<jmolCheckbox>
-
[[Category: midwest center for structural genomics]]
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/y9/1y9b_consurf.spt"</scriptWhenChecked>
-
[[Category: protein structure initiative]]
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
-
[[Category: psi]]
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: structural genomics]]
+
</jmolCheckbox>
-
[[Category: vibrio cholerae]]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1y9b ConSurf].
-
 
+
<div style="clear:both"></div>
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Feb 21 16:03:07 2008''
+
__TOC__
 +
</StructureSection>
 +
[[Category: Large Structures]]
 +
[[Category: Vibrio cholerae O1 biovar El Tor str. N16961]]
 +
[[Category: Binkowski TA]]
 +
[[Category: Hatzos C]]
 +
[[Category: Joachimiak A]]
 +
[[Category: Moy S]]
 +
[[Category: Quartey P]]

Current revision

Structure of Conserved Putative Transcriptional Factor from Vibrio cholerae O1 biovar eltor str. N16961

PDB ID 1y9b

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools