2wa2

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (15:49, 13 December 2023) (edit) (undo)
 
(7 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:2wa2.png|left|200px]]
 
-
{{STRUCTURE_2wa2| PDB=2wa2 | SCENE= }}
+
==Structure of the methyltransferase domain from Modoc Virus, a Flavivirus with No Known Vector (NKV)==
 +
<StructureSection load='2wa2' size='340' side='right'caption='[[2wa2]], [[Resolution|resolution]] 1.80&Aring;' scene=''>
 +
== Structural highlights ==
 +
<table><tr><td colspan='2'>[[2wa2]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Modoc_virus Modoc virus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2WA2 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2WA2 FirstGlance]. <br>
 +
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.8&#8491;</td></tr>
 +
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=SAM:S-ADENOSYLMETHIONINE'>SAM</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
 +
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2wa2 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2wa2 OCA], [https://pdbe.org/2wa2 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2wa2 RCSB], [https://www.ebi.ac.uk/pdbsum/2wa2 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2wa2 ProSAT]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/Q8QL64_9FLAV Q8QL64_9FLAV] Component of the viral RNA replication complex that functions in virion assembly and antagonizes the host immune response.[ARBA:ARBA00024317] Functions as a signal peptide for NS4B and is required for the interferon antagonism activity of the latter.[ARBA:ARBA00003504] Serine protease subunit NS2B: Required cofactor for the serine protease function of NS3.[PROSITE-ProRule:PRU00859]
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/wa/2wa2_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2wa2 ConSurf].
 +
<div style="clear:both"></div>
 +
<div style="background-color:#fffaf0;">
 +
== Publication Abstract from PubMed ==
 +
The Modoc virus (MODV) is a flavivirus with no known vector (NKV). Evolutionary studies have shown that the viruses in the MODV group have evolved in association with mammals (bats, rodents) without transmission by an arthropod vector. MODV methyltransferase is the first enzyme from this evolutionary branch to be structurally characterized. The high-resolution structure of the methyltransferase domain of the MODV NS5 protein (MTase(MODV)) was determined. The protein structure was solved in the apo form and in complex with its cofactor S-adenosyl-L-methionine (SAM). Although it belongs to a separate evolutionary branch, MTase(MODV) shares structural characteristics with flaviviral MTases from the other branches. Its capping machinery is a relatively new target in flaviviral drug development and the observed structural conservation between the three flaviviral branches indicates that it may be possible to identify a drug that targets a range of flaviviruses. The structural conservation also supports the choice of MODV as a possible model for flavivirus studies.
-
===STRUCTURE OF THE METHYLTRANSFERASE DOMAIN FROM MODOC VIRUS, A FLAVIVIRUS WITH NO KNOWN VECTOR (NKV)===
+
Structure of the methyltransferase domain from the Modoc virus, a flavivirus with no known vector.,Jansson AM, Jakobsson E, Johansson P, Lantez V, Coutard B, de Lamballerie X, Unge T, Jones TA Acta Crystallogr D Biol Crystallogr. 2009 Aug;65(Pt 8):796-803. Epub 2009, Jul 10. PMID:19622863<ref>PMID:19622863</ref>
-
{{ABSTRACT_PUBMED_19622863}}
+
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
-
 
+
</div>
-
==About this Structure==
+
<div class="pdbe-citations 2wa2" style="background-color:#fffaf0;"></div>
-
[[2wa2]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Modoc_virus Modoc virus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2WA2 OCA].
+
== References ==
-
 
+
<references/>
-
==Reference==
+
__TOC__
-
<ref group="xtra">PMID:019622863</ref><references group="xtra"/>
+
</StructureSection>
-
[[Category: Modoc virus]]
+
[[Category: Large Structures]]
-
[[Category: Jansson, A M.]]
+
-
[[Category: Johansson, P.]]
+
-
[[Category: Jones, T A.]]
+
-
[[Category: 2'-o-methyltransferase]]
+
-
[[Category: Envelope protein]]
+
-
[[Category: Flavivirus]]
+
-
[[Category: Membrane]]
+
-
[[Category: Methyltransferase]]
+
[[Category: Modoc virus]]
[[Category: Modoc virus]]
-
[[Category: N7-methyltransferase]]
+
[[Category: Jansson AM]]
-
[[Category: S-adenosyl-l- methionine]]
+
[[Category: Johansson P]]
-
[[Category: Transferase]]
+
[[Category: Jones TA]]
-
[[Category: Transmembrane]]
+
-
[[Category: Virion]]
+

Current revision

Structure of the methyltransferase domain from Modoc Virus, a Flavivirus with No Known Vector (NKV)

PDB ID 2wa2

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/2wa2"
Personal tools