This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2uyg

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
m (Protected "2uyg" [edit=sysop:move=sysop])
Current revision (14:58, 13 December 2023) (edit) (undo)
 
(6 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:2uyg.png|left|200px]]
 
-
{{STRUCTURE_2uyg| PDB=2uyg | SCENE= }}
+
==Crystallogaphic structure of the typeII 3-Dehydroquinase from Thermus Thermophilus==
 +
<StructureSection load='2uyg' size='340' side='right'caption='[[2uyg]], [[Resolution|resolution]] 2.20&Aring;' scene=''>
 +
== Structural highlights ==
 +
<table><tr><td colspan='2'>[[2uyg]] is a 12 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermus_thermophilus_HB8 Thermus thermophilus HB8]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2UYG OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2UYG FirstGlance]. <br>
 +
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.2&#8491;</td></tr>
 +
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene></td></tr>
 +
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2uyg FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2uyg OCA], [https://pdbe.org/2uyg PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2uyg RCSB], [https://www.ebi.ac.uk/pdbsum/2uyg PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2uyg ProSAT], [https://www.topsan.org/Proteins/RSGI/2uyg TOPSAN]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/AROQ_THET8 AROQ_THET8] Catalyzes a trans-dehydration via an enolate intermediate (By similarity).
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/uy/2uyg_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2uyg ConSurf].
 +
<div style="clear:both"></div>
-
===CRYSTALLOGAPHIC STRUCTURE OF THE TYPEII 3-DEHYDROQUINASE FROM THERMUS THERMOPHILUS===
+
==See Also==
-
 
+
*[[Dehydroquinase 3D structures|Dehydroquinase 3D structures]]
-
 
+
__TOC__
-
==About this Structure==
+
</StructureSection>
-
[[2uyg]] is a 12 chain structure with sequence from [http://en.wikipedia.org/wiki/Thermus_thermophilus Thermus thermophilus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2UYG OCA].
+
[[Category: Large Structures]]
-
[[Category: 3-dehydroquinate dehydratase]]
+
[[Category: Thermus thermophilus HB8]]
-
[[Category: Thermus thermophilus]]
+
[[Category: Agari Y]]
-
[[Category: Agari, Y.]]
+
[[Category: Imagawa T]]
-
[[Category: Imagawa, T.]]
+
[[Category: Tsuge H]]
-
[[Category: Tsuge, H.]]
+
[[Category: Utsunomiya H]]
-
[[Category: Utsunomiya, H.]]
+
-
[[Category: Lyase]]
+
-
[[Category: Typeii 3-dehydroquinase]]
+

Current revision

Crystallogaphic structure of the typeII 3-Dehydroquinase from Thermus Thermophilus

PDB ID 2uyg

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools