This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


4dia

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (10:48, 1 March 2024) (edit) (undo)
 
(3 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:4dia.png|left|200px]]
 
-
{{STRUCTURE_4dia| PDB=4dia | SCENE= }}
+
==CRYSTAL STRUCTURE OF THE D248N mutant of 2-PYRONE-4,6-DICARBOXYLIC ACID HYDROLASE FROM SPHINGOMONAS PAUCIMOBILIS complexed with substrate at pH 4.6==
-
 
+
<StructureSection load='4dia' size='340' side='right'caption='[[4dia]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
-
===CRYSTAL STRUCTURE OF THE D248N mutant of 2-PYRONE-4,6-DICARBOXYLIC ACID HYDROLASE FROM SPHINGOMONAS PAUCIMOBILIS complexed with substrate at pH 4.6===
+
== Structural highlights ==
-
 
+
<table><tr><td colspan='2'>[[4dia]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Sphingomonas_paucimobilis Sphingomonas paucimobilis]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=4d9d 4d9d]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4DIA OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4DIA FirstGlance]. <br>
-
{{ABSTRACT_PUBMED_22475079}}
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2&#8491;</td></tr>
-
 
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4dia FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4dia OCA], [https://pdbe.org/4dia PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4dia RCSB], [https://www.ebi.ac.uk/pdbsum/4dia PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4dia ProSAT]</span></td></tr>
-
==About this Structure==
+
</table>
-
[[4dia]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Sphingomonas_paucimobilis Sphingomonas paucimobilis]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=4d9d 4d9d]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4DIA OCA].
+
== Function ==
 +
[https://www.uniprot.org/uniprot/LIGI_SPHSK LIGI_SPHSK] Contributes to the degradation of lignin at the level of the protocatechuate 4,5-cleavage pathway (PubMed:9864312). Catalyzes the hydrolysis of 2-pyrone-4,6-dicarboxylate (PDC) to (4E)-oxalomesaconate (OMA) (PubMed:29658701, PubMed:22475079). The keto form of OMA can tautomerize into the enol form, 4-carboxy-2-hydroxymuconate (CHM), under certain pH conditions (PubMed:22475079). Also catalyzes the reverse reaction (PubMed:22475079, PubMed:9864312). Is essential for the growth of Sphingobium sp. SYK-6 on vanillate but is not responsible for the growth of this strain on syringate (PubMed:9864312).<ref>PMID:22475079</ref> <ref>PMID:29658701</ref> <ref>PMID:9864312</ref>
 +
== References ==
 +
<references/>
 +
__TOC__
 +
</StructureSection>
 +
[[Category: Large Structures]]
[[Category: Sphingomonas paucimobilis]]
[[Category: Sphingomonas paucimobilis]]
-
[[Category: Almo, S C.]]
+
[[Category: Almo SC]]
-
[[Category: Hobbs, M E.]]
+
[[Category: Hobbs ME]]
-
[[Category: Malashkevich, V N.]]
+
[[Category: Malashkevich VN]]
-
[[Category: Raushel, F M.]]
+
[[Category: Raushel FM]]
-
[[Category: Toro, R.]]
+
[[Category: Toro R]]
-
[[Category: Hydrolase]]
+

Current revision

CRYSTAL STRUCTURE OF THE D248N mutant of 2-PYRONE-4,6-DICARBOXYLIC ACID HYDROLASE FROM SPHINGOMONAS PAUCIMOBILIS complexed with substrate at pH 4.6

PDB ID 4dia

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/4dia"
Personal tools