1yi7

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (06:57, 23 August 2023) (edit) (undo)
 
(15 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:1yi7.gif|left|200px]]<br /><applet load="1yi7" size="350" color="white" frame="true" align="right" spinBox="true"
 
-
caption="1yi7, resolution 1.90&Aring;" />
 
-
'''Beta-d-xylosidase (selenomethionine) XYND from Clostridium Acetobutylicum'''<br />
 
-
==About this Structure==
+
==Beta-d-xylosidase (selenomethionine) XYND from Clostridium Acetobutylicum==
-
1YI7 is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Clostridium_acetobutylicum Clostridium acetobutylicum] with <scene name='pdbligand=CA:'>CA</scene>, <scene name='pdbligand=SO4:'>SO4</scene>, <scene name='pdbligand=EPE:'>EPE</scene> and <scene name='pdbligand=GOL:'>GOL</scene> as [http://en.wikipedia.org/wiki/ligands ligands]. Active as [http://en.wikipedia.org/wiki/Xylan_1,4-beta-xylosidase Xylan 1,4-beta-xylosidase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.37 3.2.1.37] Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1YI7 OCA].
+
<StructureSection load='1yi7' size='340' side='right'caption='[[1yi7]], [[Resolution|resolution]] 1.90&Aring;' scene=''>
-
[[Category: Clostridium acetobutylicum]]
+
== Structural highlights ==
-
[[Category: Single protein]]
+
<table><tr><td colspan='2'>[[1yi7]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Clostridium_acetobutylicum_ATCC_824 Clostridium acetobutylicum ATCC 824]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1YI7 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1YI7 FirstGlance]. <br>
-
[[Category: Xylan 1,4-beta-xylosidase]]
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.9&#8491;</td></tr>
-
[[Category: Almo, S C.]]
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=EPE:4-(2-HYDROXYETHYL)-1-PIPERAZINE+ETHANESULFONIC+ACID'>EPE</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-
[[Category: Burley, S K.]]
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1yi7 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1yi7 OCA], [https://pdbe.org/1yi7 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1yi7 RCSB], [https://www.ebi.ac.uk/pdbsum/1yi7 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1yi7 ProSAT], [https://www.topsan.org/Proteins/NYSGXRC/1yi7 TOPSAN]</span></td></tr>
-
[[Category: Fedorov, E.]]
+
</table>
-
[[Category: Gilliland, G L.]]
+
== Function ==
-
[[Category: NYSGXRC, New York Structural GenomiX Research Consortium.]]
+
[https://www.uniprot.org/uniprot/Q97DM1_CLOAB Q97DM1_CLOAB]
-
[[Category: Teplyakov, A.]]
+
== Evolutionary Conservation ==
-
[[Category: CA]]
+
[[Image:Consurf_key_small.gif|200px|right]]
-
[[Category: EPE]]
+
Check<jmol>
-
[[Category: GOL]]
+
<jmolCheckbox>
-
[[Category: SO4]]
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/yi/1yi7_consurf.spt"</scriptWhenChecked>
-
[[Category: beta-propeller]]
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
[[Category: beta-sandwich]]
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: new york structural genomix research consortium]]
+
</jmolCheckbox>
-
[[Category: nysgxrc]]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1yi7 ConSurf].
-
[[Category: protein structure initiative]]
+
<div style="clear:both"></div>
-
[[Category: psi]]
+
-
[[Category: structural genomics]]
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Feb 21 16:05:40 2008''
+
==See Also==
 +
*[[Xylosidase 3D structures|Xylosidase 3D structures]]
 +
__TOC__
 +
</StructureSection>
 +
[[Category: Clostridium acetobutylicum ATCC 824]]
 +
[[Category: Large Structures]]
 +
[[Category: Almo SC]]
 +
[[Category: Burley SK]]
 +
[[Category: Fedorov E]]
 +
[[Category: Gilliland GL]]
 +
[[Category: Teplyakov A]]

Current revision

Beta-d-xylosidase (selenomethionine) XYND from Clostridium Acetobutylicum

PDB ID 1yi7

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/1yi7"
Personal tools