This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3ds8

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (09:49, 22 June 2022) (edit) (undo)
 
(5 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:3ds8.png|left|200px]]
 
-
{{STRUCTURE_3ds8| PDB=3ds8 | SCENE= }}
+
==The crystal structure of the gene lin2722 products from Listeria innocua==
-
 
+
<StructureSection load='3ds8' size='340' side='right'caption='[[3ds8]], [[Resolution|resolution]] 1.80&Aring;' scene=''>
-
===The crysatl structure of the gene lin2722 products from Listeria innocua===
+
== Structural highlights ==
-
 
+
<table><tr><td colspan='2'>[[3ds8]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/"listeria_innocua"_seeliger_and_schoofs_1979 "listeria innocua" seeliger and schoofs 1979]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DS8 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3DS8 FirstGlance]. <br>
-
 
+
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-
==About this Structure==
+
<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-
[[3ds8]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Listeria_innocua Listeria innocua]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DS8 OCA].
+
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">lin2722 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1642 "Listeria innocua" Seeliger and Schoofs 1979])</td></tr>
-
[[Category: Listeria innocua]]
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3ds8 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3ds8 OCA], [https://pdbe.org/3ds8 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3ds8 RCSB], [https://www.ebi.ac.uk/pdbsum/3ds8 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3ds8 ProSAT], [https://www.topsan.org/Proteins/MCSG/3ds8 TOPSAN]</span></td></tr>
-
[[Category: Freeman, L.]]
+
</table>
-
[[Category: Joachimiak, A.]]
+
== Evolutionary Conservation ==
-
[[Category: MCSG, Midwest Center for Structural Genomics.]]
+
[[Image:Consurf_key_small.gif|200px|right]]
-
[[Category: Wu, R.]]
+
Check<jmol>
-
[[Category: Zhang, R.]]
+
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ds/3ds8_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3ds8 ConSurf].
 +
<div style="clear:both"></div>
 +
__TOC__
 +
</StructureSection>
 +
[[Category: Listeria innocua seeliger and schoofs 1979]]
 +
[[Category: Large Structures]]
 +
[[Category: Freeman, L]]
 +
[[Category: Joachimiak, A]]
 +
[[Category: Structural genomic]]
 +
[[Category: Wu, R]]
 +
[[Category: Zhang, R]]
[[Category: Lin2722]]
[[Category: Lin2722]]
[[Category: Mcsg]]
[[Category: Mcsg]]
-
[[Category: Midwest center for structural genomic]]
+
[[Category: PSI, Protein structure initiative]]
-
[[Category: Protein structure initiative]]
+
-
[[Category: Psi]]
+
-
[[Category: Structural genomic]]
+
[[Category: Unknown function]]
[[Category: Unknown function]]
[[Category: Unkonwn function]]
[[Category: Unkonwn function]]

Current revision

The crystal structure of the gene lin2722 products from Listeria innocua

PDB ID 3ds8

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools