3dzw

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
m (Protected "3dzw" [edit=sysop:move=sysop])
Current revision (01:44, 21 November 2024) (edit) (undo)
 
(5 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:3dzw.png|left|200px]]
 
-
{{STRUCTURE_3dzw| PDB=3dzw | SCENE= }}
+
==Structure of Narcissus pseudonarcissus lectin complex with Mannobiose at 1.7 A resolution, form II==
 +
<StructureSection load='3dzw' size='340' side='right'caption='[[3dzw]], [[Resolution|resolution]] 1.70&Aring;' scene=''>
 +
== Structural highlights ==
 +
<table><tr><td colspan='2'>[[3dzw]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Narcissus_pseudonarcissus Narcissus pseudonarcissus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DZW OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3DZW FirstGlance]. <br>
 +
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.7&#8491;</td></tr>
 +
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MAN:ALPHA-D-MANNOSE'>MAN</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>
 +
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3dzw FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3dzw OCA], [https://pdbe.org/3dzw PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3dzw RCSB], [https://www.ebi.ac.uk/pdbsum/3dzw PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3dzw ProSAT]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/LEC_NARPS LEC_NARPS] D-mannose-binding lectin which binds alpha-D-linked mannose (PubMed:10388566, PubMed:14505313, PubMed:1645507, PubMed:1874921, PubMed:2350177). Displays a high affinity for alpha-(1-6)-mannose oligomers (PubMed:1645507, PubMed:2350177). Able to interact with both terminal and internal alpha-D-mannosyl residues (PubMed:2350177). Displays antiviral activity and therefore may contribute to defense against infections (PubMed:1645507, PubMed:7481093).<ref>PMID:10388566</ref> <ref>PMID:14505313</ref> <ref>PMID:1645507</ref> <ref>PMID:1874921</ref> <ref>PMID:2350177</ref> <ref>PMID:7481093</ref>
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/dz/3dzw_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3dzw ConSurf].
 +
<div style="clear:both"></div>
-
===Structure of Narcissus pseudonarcissus lectin complex with Mannobiose at 1.7 A resolution, form II===
+
==See Also==
-
 
+
*[[Agglutinin 3D structures|Agglutinin 3D structures]]
-
 
+
== References ==
-
==About this Structure==
+
<references/>
-
[[3dzw]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Narcissus_pseudonarcissus Narcissus pseudonarcissus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DZW OCA].
+
__TOC__
 +
</StructureSection>
 +
[[Category: Large Structures]]
[[Category: Narcissus pseudonarcissus]]
[[Category: Narcissus pseudonarcissus]]
-
[[Category: Ozbey, S.]]
+
[[Category: Ozbey S]]
-
[[Category: Rizkallah, P J.]]
+
[[Category: Rizkallah PJ]]
-
[[Category: Sauerborn, M K.]]
+
[[Category: Sauerborn MK]]
-
[[Category: 3-mannose]]
+
-
[[Category: Agglutinin]]
+
-
[[Category: Daffodil]]
+
-
[[Category: Lectin]]
+
-
[[Category: Mannobiose]]
+
-
[[Category: Mannose-alpha1]]
+
-
[[Category: Sugar binding protein]]
+

Current revision

Structure of Narcissus pseudonarcissus lectin complex with Mannobiose at 1.7 A resolution, form II

PDB ID 3dzw

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools