This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3e6q

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
m (Protected "3e6q" [edit=sysop:move=sysop])
Current revision (11:41, 16 February 2022) (edit) (undo)
 
(4 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:3e6q.png|left|200px]]
 
-
{{STRUCTURE_3e6q| PDB=3e6q | SCENE= }}
+
==Putative 5-carboxymethyl-2-hydroxymuconate isomerase from Pseudomonas aeruginosa.==
-
 
+
<StructureSection load='3e6q' size='340' side='right'caption='[[3e6q]], [[Resolution|resolution]] 1.75&Aring;' scene=''>
-
===Putative 5-carboxymethyl-2-hydroxymuconate isomerase from Pseudomonas aeruginosa.===
+
== Structural highlights ==
-
 
+
<table><tr><td colspan='2'>[[3e6q]] is a 12 chain structure with sequence from [https://en.wikipedia.org/wiki/"bacillus_aeruginosus"_(schroeter_1872)_trevisan_1885 "bacillus aeruginosus" (schroeter 1872) trevisan 1885]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3E6Q OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3E6Q FirstGlance]. <br>
-
 
+
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=FMT:FORMIC+ACID'>FMT</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=IMD:IMIDAZOLE'>IMD</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
-
==About this Structure==
+
<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-
[[3e6q]] is a 12 chain structure with sequence from [http://en.wikipedia.org/wiki/Pseudomonas_aeruginosa Pseudomonas aeruginosa]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3E6Q OCA].
+
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">PA1966 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=287 "Bacillus aeruginosus" (Schroeter 1872) Trevisan 1885])</td></tr>
-
[[Category: Pseudomonas aeruginosa]]
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3e6q FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3e6q OCA], [https://pdbe.org/3e6q PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3e6q RCSB], [https://www.ebi.ac.uk/pdbsum/3e6q PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3e6q ProSAT], [https://www.topsan.org/Proteins/MCSG/3e6q TOPSAN]</span></td></tr>
-
[[Category: Cui, h.]]
+
</table>
-
[[Category: Edwards, a m.]]
+
== Evolutionary Conservation ==
-
[[Category: Joachimiak, a.]]
+
[[Image:Consurf_key_small.gif|200px|right]]
-
[[Category: MCSG, Midwest Center for Structural Genomics.]]
+
Check<jmol>
-
[[Category: Osipiuk, j.]]
+
<jmolCheckbox>
-
[[Category: Savchenko, a.]]
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/e6/3e6q_consurf.spt"</scriptWhenChecked>
-
[[Category: Xu, x.]]
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3e6q ConSurf].
 +
<div style="clear:both"></div>
 +
__TOC__
 +
</StructureSection>
 +
[[Category: Large Structures]]
 +
[[Category: Cui, H]]
 +
[[Category: Edwards, A M]]
 +
[[Category: Joachimiak, A]]
 +
[[Category: Structural genomic]]
 +
[[Category: Osipiuk, J]]
 +
[[Category: Savchenko, A]]
 +
[[Category: Xu, X]]
[[Category: Apc7683]]
[[Category: Apc7683]]
[[Category: Isomerase]]
[[Category: Isomerase]]
[[Category: Mcsg]]
[[Category: Mcsg]]
-
[[Category: Midwest center for structural genomic]]
+
[[Category: PSI, Protein structure initiative]]
-
[[Category: Protein structure initiative]]
+
-
[[Category: Psi-2]]
+
-
[[Category: Structural genomic]]
+

Current revision

Putative 5-carboxymethyl-2-hydroxymuconate isomerase from Pseudomonas aeruginosa.

PDB ID 3e6q

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/3e6q"
Personal tools