This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3egc

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (09:47, 21 February 2024) (edit) (undo)
 
(5 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:3egc.png|left|200px]]
 
-
{{STRUCTURE_3egc| PDB=3egc | SCENE= }}
+
==Crystal structure of a putative ribose operon repressor from Burkholderia thailandensis==
-
 
+
<StructureSection load='3egc' size='340' side='right'caption='[[3egc]], [[Resolution|resolution]] 2.35&Aring;' scene=''>
-
===Crystal structure of a putative ribose operon repressor from Burkholderia thailandensis===
+
== Structural highlights ==
-
 
+
<table><tr><td colspan='2'>[[3egc]] is a 6 chain structure with sequence from [https://en.wikipedia.org/wiki/Burkholderia_thailandensis_E264 Burkholderia thailandensis E264]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3EGC OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3EGC FirstGlance]. <br>
-
 
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.35&#8491;</td></tr>
-
==About this Structure==
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3egc FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3egc OCA], [https://pdbe.org/3egc PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3egc RCSB], [https://www.ebi.ac.uk/pdbsum/3egc PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3egc ProSAT], [https://www.topsan.org/Proteins/NYSGXRC/3egc TOPSAN]</span></td></tr>
-
[[3egc]] is a 6 chain structure with sequence from [http://en.wikipedia.org/wiki/Burkholderia_thailandensis Burkholderia thailandensis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3EGC OCA].
+
</table>
-
[[Category: Burkholderia thailandensis]]
+
== Function ==
-
[[Category: Almo, S C.]]
+
[https://www.uniprot.org/uniprot/Q2T0D1_BURTA Q2T0D1_BURTA]
-
[[Category: Bain, K T.]]
+
== Evolutionary Conservation ==
-
[[Category: Bonanno, J B.]]
+
[[Image:Consurf_key_small.gif|200px|right]]
-
[[Category: Burley, S K.]]
+
Check<jmol>
-
[[Category: Gilmore, M.]]
+
<jmolCheckbox>
-
[[Category: Hu, S.]]
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/eg/3egc_consurf.spt"</scriptWhenChecked>
-
[[Category: NYSGXRC, New York SGX Research Center for Structural Genomics.]]
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
[[Category: Patskovsky, Y.]]
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: Romero, R.]]
+
</jmolCheckbox>
-
[[Category: Sauder, J M.]]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3egc ConSurf].
-
[[Category: Wasserman, S.]]
+
<div style="clear:both"></div>
-
[[Category: Dna-binding]]
+
__TOC__
-
[[Category: New york sgx research center for structural genomic]]
+
</StructureSection>
-
[[Category: Nysgxrc]]
+
[[Category: Burkholderia thailandensis E264]]
-
[[Category: Protein structure initiative]]
+
[[Category: Large Structures]]
-
[[Category: Psi-2]]
+
[[Category: Almo SC]]
-
[[Category: Structural genomic]]
+
[[Category: Bain KT]]
-
[[Category: Transcription]]
+
[[Category: Bonanno JB]]
-
[[Category: Transcription regulation]]
+
[[Category: Burley SK]]
-
[[Category: Unknown function]]
+
[[Category: Gilmore M]]
 +
[[Category: Hu S]]
 +
[[Category: Patskovsky Y]]
 +
[[Category: Romero R]]
 +
[[Category: Sauder JM]]
 +
[[Category: Wasserman S]]

Current revision

Crystal structure of a putative ribose operon repressor from Burkholderia thailandensis

PDB ID 3egc

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools