This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1z4e

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (09:02, 14 February 2024) (edit) (undo)
 
(16 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:1z4e.gif|left|200px]]<br /><applet load="1z4e" size="350" color="white" frame="true" align="right" spinBox="true"
 
-
caption="1z4e, resolution 2.00&Aring;" />
 
-
'''Crystal structure of transcriptional regulator from Bacillus halodurans C-125'''<br />
 
-
==About this Structure==
+
==Crystal structure of transcriptional regulator from Bacillus halodurans C-125==
-
1Z4E is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Bacillus_halodurans Bacillus halodurans]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1Z4E OCA].
+
<StructureSection load='1z4e' size='340' side='right'caption='[[1z4e]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
-
[[Category: Bacillus halodurans]]
+
== Structural highlights ==
-
[[Category: Single protein]]
+
<table><tr><td colspan='2'>[[1z4e]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Alkalihalobacillus_halodurans_C-125 Alkalihalobacillus halodurans C-125]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1Z4E OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1Z4E FirstGlance]. <br>
-
[[Category: Almo, S C.]]
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2&#8491;</td></tr>
-
[[Category: Burley, S K.]]
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1z4e FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1z4e OCA], [https://pdbe.org/1z4e PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1z4e RCSB], [https://www.ebi.ac.uk/pdbsum/1z4e PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1z4e ProSAT], [https://www.topsan.org/Proteins/NYSGXRC/1z4e TOPSAN]</span></td></tr>
-
[[Category: Fedorov, A A.]]
+
</table>
-
[[Category: Fedorov, E V.]]
+
== Function ==
-
[[Category: NYSGXRC, New York Structural GenomiX Research Consortium.]]
+
[https://www.uniprot.org/uniprot/Q9KBG0_HALH5 Q9KBG0_HALH5]
-
[[Category: gnat fold]]
+
== Evolutionary Conservation ==
-
[[Category: new york structural genomix research consortium]]
+
[[Image:Consurf_key_small.gif|200px|right]]
-
[[Category: nysgrc]]
+
Check<jmol>
-
[[Category: nysgxrc target t2017]]
+
<jmolCheckbox>
-
[[Category: protein structure initiative]]
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/z4/1z4e_consurf.spt"</scriptWhenChecked>
-
[[Category: psi]]
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
[[Category: structural genomics]]
+
<text>to colour the structure by Evolutionary Conservation</text>
-
 
+
</jmolCheckbox>
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Feb 21 16:11:59 2008''
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1z4e ConSurf].
 +
<div style="clear:both"></div>
 +
__TOC__
 +
</StructureSection>
 +
[[Category: Alkalihalobacillus halodurans C-125]]
 +
[[Category: Large Structures]]
 +
[[Category: Almo SC]]
 +
[[Category: Burley SK]]
 +
[[Category: Fedorov AA]]
 +
[[Category: Fedorov EV]]

Current revision

Crystal structure of transcriptional regulator from Bacillus halodurans C-125

PDB ID 1z4e

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools