2dep

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (08:26, 25 October 2023) (edit) (undo)
 
(6 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:2dep.png|left|200px]]
 
-
{{STRUCTURE_2dep| PDB=2dep | SCENE= }}
+
==Crystal Structure of xylanase B from Clostridium stercorarium F9==
-
 
+
<StructureSection load='2dep' size='340' side='right'caption='[[2dep]], [[Resolution|resolution]] 1.80&Aring;' scene=''>
-
===Crystal Structure of xylanase B from Clostridium stercorarium F9===
+
== Structural highlights ==
-
 
+
<table><tr><td colspan='2'>[[2dep]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermoclostridium_stercorarium Thermoclostridium stercorarium]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2DEP OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2DEP FirstGlance]. <br>
-
{{ABSTRACT_PUBMED_14747719}}
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.8&#8491;</td></tr>
-
 
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2dep FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2dep OCA], [https://pdbe.org/2dep PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2dep RCSB], [https://www.ebi.ac.uk/pdbsum/2dep PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2dep ProSAT]</span></td></tr>
-
==About this Structure==
+
</table>
-
[[2dep]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Clostridium_stercorarium Clostridium stercorarium]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2DEP OCA].
+
== Function ==
-
 
+
[https://www.uniprot.org/uniprot/CEXY_THEST CEXY_THEST] Active toward xylan, carboxymethylcellulose, P-nitrophenyl-beta-D-xylopyranoside and P-nitrophenyl-beta-D-cellobioside.
-
==Reference==
+
== Evolutionary Conservation ==
-
<ref group="xtra">PMID:014747719</ref><ref group="xtra">PMID:015914908</ref><references group="xtra"/>
+
[[Image:Consurf_key_small.gif|200px|right]]
-
[[Category: Clostridium stercorarium]]
+
Check<jmol>
-
[[Category: Fushinobu, S.]]
+
<jmolCheckbox>
-
[[Category: Hayashi, K.]]
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/de/2dep_consurf.spt"</scriptWhenChecked>
-
[[Category: Kitaoka, M.]]
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
[[Category: Miyanaga, A.]]
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: Nishimoto, M.]]
+
</jmolCheckbox>
-
[[Category: Family 10]]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2dep ConSurf].
-
[[Category: Glycosidase]]
+
<div style="clear:both"></div>
-
[[Category: Hydrolase]]
+
__TOC__
-
[[Category: National project on protein structural and functional analyse]]
+
</StructureSection>
-
[[Category: Nppsfa]]
+
[[Category: Large Structures]]
-
[[Category: Structural genomic]]
+
[[Category: Thermoclostridium stercorarium]]
-
[[Category: Xylan degradation]]
+
[[Category: Fushinobu S]]
 +
[[Category: Hayashi K]]
 +
[[Category: Kitaoka M]]
 +
[[Category: Miyanaga A]]
 +
[[Category: Nishimoto M]]

Current revision

Crystal Structure of xylanase B from Clostridium stercorarium F9

PDB ID 2dep

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/2dep"
Personal tools