This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1ywm

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (09:00, 14 February 2024) (edit) (undo)
 
(5 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:1ywm.png|left|200px]]
 
-
{{STRUCTURE_1ywm| PDB=1ywm | SCENE= }}
+
==Crystal structure of the N-terminal domain of group B Streptococcus alpha C protein==
-
 
+
<StructureSection load='1ywm' size='340' side='right'caption='[[1ywm]], [[Resolution|resolution]] 1.86&Aring;' scene=''>
-
===Crystal structure of the N-terminal domain of group B Streptococcus alpha C protein===
+
== Structural highlights ==
-
 
+
<table><tr><td colspan='2'>[[1ywm]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Streptococcus_agalactiae_A909 Streptococcus agalactiae A909]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1YWM OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1YWM FirstGlance]. <br>
-
{{ABSTRACT_PUBMED_15753100}}
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.86&#8491;</td></tr>
-
 
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=DTU:(2R,3S)-1,4-DIMERCAPTOBUTANE-2,3-DIOL'>DTU</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene></td></tr>
-
==About this Structure==
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1ywm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1ywm OCA], [https://pdbe.org/1ywm PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1ywm RCSB], [https://www.ebi.ac.uk/pdbsum/1ywm PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1ywm ProSAT]</span></td></tr>
-
[[1ywm]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Streptococcus_agalactiae_a909 Streptococcus agalactiae a909]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1YWM OCA].
+
</table>
-
 
+
== Function ==
-
==Reference==
+
[https://www.uniprot.org/uniprot/BCA_STRA1 BCA_STRA1] May play a role in both virulence and immunity.
-
<ref group="xtra">PMID:015753100</ref><ref group="xtra">PMID:001438195</ref><ref group="xtra">PMID:015044471</ref><references group="xtra"/>
+
== Evolutionary Conservation ==
-
[[Category: Streptococcus agalactiae a909]]
+
[[Image:Consurf_key_small.gif|200px|right]]
-
[[Category: Auperin, T C.]]
+
Check<jmol>
-
[[Category: Baron, M J.]]
+
<jmolCheckbox>
-
[[Category: Bolduc, G R.]]
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/yw/1ywm_consurf.spt"</scriptWhenChecked>
-
[[Category: Filman, D J.]]
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
[[Category: Heroux, A.]]
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: Hogle, J M.]]
+
</jmolCheckbox>
-
[[Category: Madoff, L C.]]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1ywm ConSurf].
-
[[Category: Antiparallel three-helix bundle]]
+
<div style="clear:both"></div>
-
[[Category: Beta sandwich]]
+
__TOC__
-
[[Category: Fibronectin fold]]
+
</StructureSection>
-
[[Category: Surface active protein]]
+
[[Category: Large Structures]]
 +
[[Category: Streptococcus agalactiae A909]]
 +
[[Category: Auperin TC]]
 +
[[Category: Baron MJ]]
 +
[[Category: Bolduc GR]]
 +
[[Category: Filman DJ]]
 +
[[Category: Heroux A]]
 +
[[Category: Hogle JM]]
 +
[[Category: Madoff LC]]

Current revision

Crystal structure of the N-terminal domain of group B Streptococcus alpha C protein

PDB ID 1ywm

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools