This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.
Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.
3g6s
From Proteopedia
| (4 intermediate revisions not shown.) | |||
| Line 1: | Line 1: | ||
| - | [[Image:3g6s.png|left|200px]] | ||
| - | + | ==Crystal structure of the endonuclease/exonuclease/phosphatase (BVU_0621) from Bacteroides vulgatus. Northeast Structural Genomics Consortium Target BvR56D== | |
| - | + | <StructureSection load='3g6s' size='340' side='right'caption='[[3g6s]], [[Resolution|resolution]] 2.50Å' scene=''> | |
| - | + | == Structural highlights == | |
| - | + | <table><tr><td colspan='2'>[[3g6s]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Bacv8 Bacv8]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3G6S OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3G6S FirstGlance]. <br> | |
| - | + | </td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr> | |
| - | == | + | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">BVU_0621 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=435590 BACV8])</td></tr> |
| - | [[3g6s]] is a 1 chain structure with sequence from [ | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3g6s FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3g6s OCA], [https://pdbe.org/3g6s PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3g6s RCSB], [https://www.ebi.ac.uk/pdbsum/3g6s PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3g6s ProSAT], [https://www.topsan.org/Proteins/NESGC/3g6s TOPSAN]</span></td></tr> |
| - | [[Category: | + | </table> |
| - | [[Category: Acton, T B | + | == Evolutionary Conservation == |
| - | [[Category: Ciccosanti, C | + | [[Image:Consurf_key_small.gif|200px|right]] |
| - | [[Category: Everett, J K | + | Check<jmol> |
| - | [[Category: Foote, E L | + | <jmolCheckbox> |
| - | [[Category: Forouhar, F | + | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/g6/3g6s_consurf.spt"</scriptWhenChecked> |
| - | [[Category: Hunt, J F | + | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> |
| - | [[Category: Lew, S | + | <text>to colour the structure by Evolutionary Conservation</text> |
| - | [[Category: Montelione, G T | + | </jmolCheckbox> |
| - | [[Category: | + | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3g6s ConSurf]. |
| - | [[Category: Nair, R | + | <div style="clear:both"></div> |
| + | __TOC__ | ||
| + | </StructureSection> | ||
| + | [[Category: Bacv8]] | ||
| + | [[Category: Large Structures]] | ||
| + | [[Category: Acton, T B]] | ||
| + | [[Category: Ciccosanti, C]] | ||
| + | [[Category: Everett, J K]] | ||
| + | [[Category: Foote, E L]] | ||
| + | [[Category: Forouhar, F]] | ||
| + | [[Category: Hunt, J F]] | ||
| + | [[Category: Lew, S]] | ||
| + | [[Category: Montelione, G T]] | ||
| + | [[Category: Structural genomic]] | ||
| + | [[Category: Nair, R]] | ||
[[Category: Rost, B]] | [[Category: Rost, B]] | ||
| - | [[Category: Sahdev, S | + | [[Category: Sahdev, S]] |
| - | [[Category: Seetharaman, J | + | [[Category: Seetharaman, J]] |
| - | [[Category: Tong, L | + | [[Category: Tong, L]] |
| - | [[Category: Wang, D | + | [[Category: Wang, D]] |
| - | [[Category: Xiao, R | + | [[Category: Xiao, R]] |
[[Category: Alpha-beta protein]] | [[Category: Alpha-beta protein]] | ||
[[Category: Endonuclease]] | [[Category: Endonuclease]] | ||
| Line 31: | Line 44: | ||
[[Category: Hydrolase]] | [[Category: Hydrolase]] | ||
[[Category: Nesg]] | [[Category: Nesg]] | ||
| - | [[Category: | + | [[Category: PSI, Protein structure initiative]] |
| - | + | ||
| - | + | ||
| - | + | ||
Current revision
Crystal structure of the endonuclease/exonuclease/phosphatase (BVU_0621) from Bacteroides vulgatus. Northeast Structural Genomics Consortium Target BvR56D
| |||||||||||
Categories: Bacv8 | Large Structures | Acton, T B | Ciccosanti, C | Everett, J K | Foote, E L | Forouhar, F | Hunt, J F | Lew, S | Montelione, G T | Structural genomic | Nair, R | Rost, B | Sahdev, S | Seetharaman, J | Tong, L | Wang, D | Xiao, R | Alpha-beta protein | Endonuclease | Endonuclease/exonuclease/phosphatase | Exonuclease | Hydrolase | Nesg | PSI, Protein structure initiative

