This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3g8w

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
m (Protected "3g8w" [edit=sysop:move=sysop])
Current revision (07:58, 9 March 2022) (edit) (undo)
 
(3 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:3g8w.png|left|200px]]
 
-
{{STRUCTURE_3g8w| PDB=3g8w | SCENE= }}
+
==Crystal structure of a probable acetyltransferase from Staphylococcus epidermidis ATCC 12228==
-
 
+
<StructureSection load='3g8w' size='340' side='right'caption='[[3g8w]], [[Resolution|resolution]] 2.70&Aring;' scene=''>
-
===Crystal structure of a probable acetyltransferase from Staphylococcus epidermidis ATCC 12228===
+
== Structural highlights ==
-
 
+
<table><tr><td colspan='2'>[[3g8w]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Staes Staes]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3G8W OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3G8W FirstGlance]. <br>
-
 
+
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FLC:CITRATE+ANION'>FLC</scene>, <scene name='pdbligand=NHE:2-[N-CYCLOHEXYLAMINO]ETHANE+SULFONIC+ACID'>NHE</scene></td></tr>
-
==About this Structure==
+
<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-
[[3g8w]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Staphylococcus_epidermidis_atcc_12228 Staphylococcus epidermidis atcc 12228]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3G8W OCA].
+
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">SE_0588 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=176280 STAES])</td></tr>
-
[[Category: Staphylococcus epidermidis atcc 12228]]
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3g8w FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3g8w OCA], [https://pdbe.org/3g8w PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3g8w RCSB], [https://www.ebi.ac.uk/pdbsum/3g8w PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3g8w ProSAT], [https://www.topsan.org/Proteins/MCSG/3g8w TOPSAN]</span></td></tr>
-
[[Category: Clancy, S.]]
+
</table>
-
[[Category: Joachimiak, A.]]
+
== Evolutionary Conservation ==
-
[[Category: MCSG, Midwest Center for Structural Genomics.]]
+
[[Image:Consurf_key_small.gif|200px|right]]
-
[[Category: Marshall, N.]]
+
Check<jmol>
-
[[Category: Sather, A.]]
+
<jmolCheckbox>
-
[[Category: Tan, K.]]
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/g8/3g8w_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3g8w ConSurf].
 +
<div style="clear:both"></div>
 +
__TOC__
 +
</StructureSection>
 +
[[Category: Large Structures]]
 +
[[Category: Staes]]
 +
[[Category: Clancy, S]]
 +
[[Category: Joachimiak, A]]
 +
[[Category: Structural genomic]]
 +
[[Category: Marshall, N]]
 +
[[Category: Sather, A]]
 +
[[Category: Tan, K]]
[[Category: Acetyltransferase]]
[[Category: Acetyltransferase]]
[[Category: Apc61042]]
[[Category: Apc61042]]
[[Category: Mcsg]]
[[Category: Mcsg]]
-
[[Category: Midwest center for structural genomic]]
+
[[Category: PSI, Protein structure initiative]]
-
[[Category: Protein structure initiative]]
+
-
[[Category: Psi-2]]
+
[[Category: Staphylococcus epidermidis atcc 12228]]
[[Category: Staphylococcus epidermidis atcc 12228]]
-
[[Category: Structural genomic]]
 
[[Category: Transferase]]
[[Category: Transferase]]

Current revision

Crystal structure of a probable acetyltransferase from Staphylococcus epidermidis ATCC 12228

PDB ID 3g8w

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools