This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3gs9

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
m (Protected "3gs9" [edit=sysop:move=sysop])
Current revision (11:39, 1 February 2023) (edit) (undo)
 
(4 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:3gs9.png|left|200px]]
 
-
{{STRUCTURE_3gs9| PDB=3gs9 | SCENE= }}
+
==Crystal structure of prophage tail protein gp18 (NP_465809.1) from Listeria monocytogenes EGD-e at 1.70 A resolution==
-
 
+
<StructureSection load='3gs9' size='340' side='right'caption='[[3gs9]], [[Resolution|resolution]] 1.70&Aring;' scene=''>
-
===Crystal structure of prophage tail protein gp18 (NP_465809.1) from Listeria monocytogenes EGD-e at 1.70 A resolution===
+
== Structural highlights ==
-
 
+
<table><tr><td colspan='2'>[[3gs9]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Listeria_monocytogenes_EGD-e Listeria monocytogenes EGD-e]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3GS9 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3GS9 FirstGlance]. <br>
-
 
+
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MLY:N-DIMETHYL-LYSINE'>MLY</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=OCS:CYSTEINESULFONIC+ACID'>OCS</scene></td></tr>
-
==About this Structure==
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3gs9 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3gs9 OCA], [https://pdbe.org/3gs9 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3gs9 RCSB], [https://www.ebi.ac.uk/pdbsum/3gs9 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3gs9 ProSAT], [https://www.topsan.org/Proteins/JCSG/3gs9 TOPSAN]</span></td></tr>
-
[[3gs9]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Listeria_monocytogenes_egd-e Listeria monocytogenes egd-e]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3GS9 OCA].
+
</table>
-
[[Category: Listeria monocytogenes egd-e]]
+
== Function ==
-
[[Category: JCSG, Joint Center for Structural Genomics.]]
+
[https://www.uniprot.org/uniprot/Q8Y4Z4_LISMO Q8Y4Z4_LISMO]
-
[[Category: Jcsg]]
+
== Evolutionary Conservation ==
-
[[Category: Joint center for structural genomic]]
+
[[Image:Consurf_key_small.gif|200px|right]]
-
[[Category: Np_465809 1]]
+
Check<jmol>
-
[[Category: Prophage tail protein gp18]]
+
<jmolCheckbox>
-
[[Category: Protein structure initiative]]
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/gs/3gs9_consurf.spt"</scriptWhenChecked>
-
[[Category: Psi-2]]
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
[[Category: Structural genomic]]
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: Structural protein]]
+
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3gs9 ConSurf].
 +
<div style="clear:both"></div>
 +
__TOC__
 +
</StructureSection>
 +
[[Category: Large Structures]]
 +
[[Category: Listeria monocytogenes EGD-e]]

Current revision

Crystal structure of prophage tail protein gp18 (NP_465809.1) from Listeria monocytogenes EGD-e at 1.70 A resolution

PDB ID 3gs9

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools