This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3gvm

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (08:26, 20 March 2024) (edit) (undo)
 
(5 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:3gvm.png|left|200px]]
 
-
{{STRUCTURE_3gvm| PDB=3gvm | SCENE= }}
+
==Structure of the homodimeric WXG-100 family protein from Streptococcus agalactiae==
-
 
+
<StructureSection load='3gvm' size='340' side='right'caption='[[3gvm]], [[Resolution|resolution]] 2.15&Aring;' scene=''>
-
===Structure of the homodimeric WXG-100 family protein from Streptococcus agalactiae===
+
== Structural highlights ==
-
 
+
<table><tr><td colspan='2'>[[3gvm]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Streptococcus_agalactiae_2603V/R Streptococcus agalactiae 2603V/R]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3GVM OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3GVM FirstGlance]. <br>
-
 
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.15&#8491;</td></tr>
-
==About this Structure==
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3gvm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3gvm OCA], [https://pdbe.org/3gvm PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3gvm RCSB], [https://www.ebi.ac.uk/pdbsum/3gvm PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3gvm ProSAT]</span></td></tr>
-
[[3gvm]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Streptococcus_agalactiae_serogroup_v Streptococcus agalactiae serogroup v]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3GVM OCA].
+
</table>
-
[[Category: Streptococcus agalactiae serogroup v]]
+
== Function ==
-
[[Category: Gries, F.]]
+
[https://www.uniprot.org/uniprot/ESX2_STRA5 ESX2_STRA5]
-
[[Category: Poulsen, C.]]
+
== Evolutionary Conservation ==
-
[[Category: Song, Y H.]]
+
[[Image:Consurf_key_small.gif|200px|right]]
-
[[Category: Wilmanns, M.]]
+
Check<jmol>
-
[[Category: Four-helical bundle]]
+
<jmolCheckbox>
-
[[Category: Viral protein]]
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/gv/3gvm_consurf.spt"</scriptWhenChecked>
-
[[Category: Wxg motif]]
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3gvm ConSurf].
 +
<div style="clear:both"></div>
 +
__TOC__
 +
</StructureSection>
 +
[[Category: Large Structures]]
 +
[[Category: Streptococcus agalactiae 2603V/R]]
 +
[[Category: Gries F]]
 +
[[Category: Poulsen C]]
 +
[[Category: Song YH]]
 +
[[Category: Wilmanns M]]

Current revision

Structure of the homodimeric WXG-100 family protein from Streptococcus agalactiae

PDB ID 3gvm

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools