This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3gg2

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
m (Protected "3gg2" [edit=sysop:move=sysop])
Current revision (09:54, 21 February 2024) (edit) (undo)
 
(4 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:3gg2.png|left|200px]]
 
-
{{STRUCTURE_3gg2| PDB=3gg2 | SCENE= }}
+
==Crystal structure of UDP-glucose 6-dehydrogenase from Porphyromonas gingivalis bound to product UDP-glucuronate==
-
 
+
<StructureSection load='3gg2' size='340' side='right'caption='[[3gg2]], [[Resolution|resolution]] 1.70&Aring;' scene=''>
-
===Crystal structure of UDP-glucose 6-dehydrogenase from Porphyromonas gingivalis bound to product UDP-glucuronate===
+
== Structural highlights ==
-
 
+
<table><tr><td colspan='2'>[[3gg2]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Porphyromonas_gingivalis Porphyromonas gingivalis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3GG2 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3GG2 FirstGlance]. <br>
-
 
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.7&#8491;</td></tr>
-
==About this Structure==
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=UGA:URIDINE-5-DIPHOSPHATE-GLUCURONIC+ACID'>UGA</scene></td></tr>
-
[[3gg2]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Porphyromonas_gingivalis Porphyromonas gingivalis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3GG2 OCA].
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3gg2 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3gg2 OCA], [https://pdbe.org/3gg2 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3gg2 RCSB], [https://www.ebi.ac.uk/pdbsum/3gg2 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3gg2 ProSAT], [https://www.topsan.org/Proteins/NYSGXRC/3gg2 TOPSAN]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/Q7MVC7_PORGI Q7MVC7_PORGI]
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/gg/3gg2_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3gg2 ConSurf].
 +
<div style="clear:both"></div>
 +
__TOC__
 +
</StructureSection>
 +
[[Category: Large Structures]]
[[Category: Porphyromonas gingivalis]]
[[Category: Porphyromonas gingivalis]]
-
[[Category: UDP-glucose 6-dehydrogenase]]
+
[[Category: Almo SC]]
-
[[Category: Almo, S C.]]
+
[[Category: Bain KT]]
-
[[Category: Bain, K T.]]
+
[[Category: Bonanno JB]]
-
[[Category: Bonanno, J B.]]
+
[[Category: Burley SK]]
-
[[Category: Burley, S K.]]
+
[[Category: Chang S]]
-
[[Category: Chang, S.]]
+
[[Category: Freeman J]]
-
[[Category: Freeman, J.]]
+
[[Category: Sampathkumar P]]
-
[[Category: NYSGXRC, New York SGX Research Center for Structural Genomics.]]
+
[[Category: Sauder JM]]
-
[[Category: Sampathkumar, P.]]
+
[[Category: Wasserman S]]
-
[[Category: Sauder, J M.]]
+
-
[[Category: Wasserman, S.]]
+
-
[[Category: New york sgx research center for structural genomic]]
+
-
[[Category: Nysgxrc]]
+
-
[[Category: Oxidoreductase]]
+
-
[[Category: Protein structure initiative]]
+
-
[[Category: Psi-2]]
+
-
[[Category: Structural genomic]]
+

Current revision

Crystal structure of UDP-glucose 6-dehydrogenase from Porphyromonas gingivalis bound to product UDP-glucuronate

PDB ID 3gg2

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools