3h7o

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
m (Protected "3h7o" [edit=sysop:move=sysop])
Current revision (09:13, 30 October 2024) (edit) (undo)
 
(6 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:3h7o.png|left|200px]]
 
-
{{STRUCTURE_3h7o| PDB=3h7o | SCENE= }}
+
==Crystal structure of scabies mite inactivated protease paralogue S-I1 (SMIPP-S-I1)==
 +
<StructureSection load='3h7o' size='340' side='right'caption='[[3h7o]], [[Resolution|resolution]] 1.85&Aring;' scene=''>
 +
== Structural highlights ==
 +
<table><tr><td colspan='2'>[[3h7o]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Sarcoptes_scabiei Sarcoptes scabiei]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3H7O OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3H7O FirstGlance]. <br>
 +
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.85&#8491;</td></tr>
 +
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
 +
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3h7o FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3h7o OCA], [https://pdbe.org/3h7o PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3h7o RCSB], [https://www.ebi.ac.uk/pdbsum/3h7o PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3h7o ProSAT]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/Q6VPT6_SARSC Q6VPT6_SARSC]
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/h7/3h7o_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3h7o ConSurf].
 +
<div style="clear:both"></div>
 +
<div style="background-color:#fffaf0;">
 +
== Publication Abstract from PubMed ==
 +
The scabies mite (Sarcoptes scabiei) is a parasite responsible for major morbidity in disadvantaged communities and immuno-compromised patients worldwide. In addition to the physical discomfort caused by the disease, scabies infestations facilitate infection by Streptococcal species via skin lesions, resulting in a high prevalence of rheumatic fever/heart disease in affected communities. The scabies mite produces 33 proteins that are closely related to those in the dust mite group 3 allergen and belong to the S1-like protease family (chymotrypsin-like). However, all but one of these molecules contain mutations in the conserved active-site catalytic triad that are predicted to render them catalytically inactive. These molecules are thus termed scabies mite inactivated protease paralogues (SMIPPs). The precise function of SMIPPs is unclear; however, it has been suggested that these proteins might function by binding and protecting target substrates from cleavage by host immune proteases, thus preventing the host from mounting an effective immune challenge. In order to begin to understand the structural basis for SMIPP function, we solved the crystal structures of SMIPP-S-I1 and SMIPP-S-D1 at 1.85 A and 2.0 A resolution, respectively. Both structures adopt the characteristic serine protease fold, albeit with large structural variations over much of the molecule. In both structures, mutations in the catalytic triad together with occlusion of the S1 subsite by a conserved Tyr200 residue is predicted to block substrate ingress. Accordingly, we show that both proteases lack catalytic function. Attempts to restore function (via site-directed mutagenesis of catalytic residues as well as Tyr200) were unsuccessful. Taken together, these data suggest that SMIPPs have lost the ability to bind substrates in a classical "canonical" fashion, and instead have evolved alternative functions in the lifecycle of the scabies mite.
-
===Crystal structure of scabies mite inactivated protease paralogue S-I1 (SMIPP-S-I1)===
+
Structural mechanisms of inactivation in scabies mite serine protease paralogues.,Fischer K, Langendorf CG, Irving JA, Reynolds S, Willis C, Beckham S, Law RH, Yang S, Bashtannyk-Puhalovich TA, McGowan S, Whisstock JC, Pike RN, Kemp DJ, Buckle AM J Mol Biol. 2009 Jul 24;390(4):635-45. Epub 2009 May 7. PMID:19427318<ref>PMID:19427318</ref>
-
{{ABSTRACT_PUBMED_19427318}}
+
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
-
 
+
</div>
-
==About this Structure==
+
<div class="pdbe-citations 3h7o" style="background-color:#fffaf0;"></div>
-
[[3h7o]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Sarcoptes_scabiei_type_hominis Sarcoptes scabiei type hominis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3H7O OCA].
+
== References ==
-
[[Category: Sarcoptes scabiei type hominis]]
+
<references/>
-
[[Category: Buckle, A M.]]
+
__TOC__
-
[[Category: Hydrolase]]
+
</StructureSection>
 +
[[Category: Large Structures]]
 +
[[Category: Sarcoptes scabiei]]
 +
[[Category: Buckle AM]]

Current revision

Crystal structure of scabies mite inactivated protease paralogue S-I1 (SMIPP-S-I1)

PDB ID 3h7o

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools