This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3h3w

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (09:57, 21 February 2024) (edit) (undo)
 
(7 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:3h3w.png|left|200px]]
 
-
{{STRUCTURE_3h3w| PDB=3h3w | SCENE= }}
+
==Fitting of the gp6 crystal structure into 3D cryo-EM reconstruction of bacteriophage T4 dome-shaped baseplate==
-
 
+
<SX load='3h3w' size='340' side='right' viewer='molstar' caption='[[3h3w]], [[Resolution|resolution]] 12.00&Aring;' scene=''>
-
===Fitting of the gp6 crystal structure into 3D cryo-EM reconstruction of bacteriophage T4 dome-shaped baseplate===
+
== Structural highlights ==
-
 
+
<table><tr><td colspan='2'>[[3h3w]] is a 12 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_virus_T4 Escherichia virus T4]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3H3W OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3H3W FirstGlance]. <br>
-
{{ABSTRACT_PUBMED_19523898}}
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Electron Microscopy, [[Resolution|Resolution]] 12&#8491;</td></tr>
-
 
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3h3w FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3h3w OCA], [https://pdbe.org/3h3w PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3h3w RCSB], [https://www.ebi.ac.uk/pdbsum/3h3w PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3h3w ProSAT]</span></td></tr>
-
==About this Structure==
+
</table>
-
[[3h3w]] is a 12 chain structure with sequence from [http://en.wikipedia.org/wiki/Enterobacteria_phage_t4 Enterobacteria phage t4]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3H3W OCA].
+
== Function ==
-
 
+
[https://www.uniprot.org/uniprot/BP06_BPT4 BP06_BPT4] Baseplate protein that is part of the baseplate wedge (PubMed:15315755). Involved in the tail assembly.<ref>PMID:15315755</ref> <ref>PMID:21129200</ref>
-
==Reference==
+
== Evolutionary Conservation ==
-
<ref group="xtra">PMID:019523898</ref><references group="xtra"/>
+
[[Image:Consurf_key_small.gif|200px|right]]
-
[[Category: Enterobacteria phage t4]]
+
Check<jmol>
-
[[Category: Aksyuk, A A.]]
+
<jmolCheckbox>
-
[[Category: Leiman, P G.]]
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/h3/3h3w_consurf.spt"</scriptWhenChecked>
-
[[Category: Mesyanzhinov, V V.]]
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
[[Category: Rossmann, M G.]]
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: Shneider, M M.]]
+
</jmolCheckbox>
-
[[Category: Viral protein]]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3h3w ConSurf].
-
[[Category: Viral structural protein]]
+
<div style="clear:both"></div>
-
[[Category: Virion]]
+
== References ==
 +
<references/>
 +
__TOC__
 +
</SX>
 +
[[Category: Escherichia virus T4]]
 +
[[Category: Large Structures]]
 +
[[Category: Aksyuk AA]]
 +
[[Category: Leiman PG]]
 +
[[Category: Mesyanzhinov VV]]
 +
[[Category: Rossmann MG]]
 +
[[Category: Shneider MM]]

Current revision

Fitting of the gp6 crystal structure into 3D cryo-EM reconstruction of bacteriophage T4 dome-shaped baseplate

3h3w, resolution 12.00Å

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/3h3w"
Personal tools