This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3hrl

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (11:55, 30 March 2022) (edit) (undo)
 
(4 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:3hrl.png|left|200px]]
 
-
{{STRUCTURE_3hrl| PDB=3hrl | SCENE= }}
+
==Crystal structure of a putative endonuclease-like protein (ngo0050) from neisseria gonorrhoeae==
-
 
+
<StructureSection load='3hrl' size='340' side='right'caption='[[3hrl]], [[Resolution|resolution]] 1.95&Aring;' scene=''>
-
===Crystal structure of a putative endonuclease-like protein (ngo0050) from neisseria gonorrhoeae===
+
== Structural highlights ==
-
 
+
<table><tr><td colspan='2'>[[3hrl]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Neig1 Neig1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3HRL OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3HRL FirstGlance]. <br>
-
 
+
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene></td></tr>
-
==About this Structure==
+
<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-
[[3hrl]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Neisseria_gonorrhoeae_fa_1090 Neisseria gonorrhoeae fa 1090]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3HRL OCA].
+
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">NGO0050 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=242231 NEIG1])</td></tr>
-
[[Category: Neisseria gonorrhoeae fa 1090]]
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3hrl FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3hrl OCA], [https://pdbe.org/3hrl PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3hrl RCSB], [https://www.ebi.ac.uk/pdbsum/3hrl PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3hrl ProSAT], [https://www.topsan.org/Proteins/MCSG/3hrl TOPSAN]</span></td></tr>
-
[[Category: Anderson, W F.]]
+
</table>
-
[[Category: Cobb, G.]]
+
== Evolutionary Conservation ==
-
[[Category: Filippova, E V.]]
+
[[Image:Consurf_key_small.gif|200px|right]]
-
[[Category: Joachimiak, A.]]
+
Check<jmol>
-
[[Category: Kiryukhina, O.]]
+
<jmolCheckbox>
-
[[Category: MCSG, Midwest Center for Structural Genomics.]]
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/hr/3hrl_consurf.spt"</scriptWhenChecked>
-
[[Category: Minasov, G.]]
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
[[Category: Shuvalova, L.]]
+
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3hrl ConSurf].
 +
<div style="clear:both"></div>
 +
__TOC__
 +
</StructureSection>
 +
[[Category: Large Structures]]
 +
[[Category: Neig1]]
 +
[[Category: Anderson, W F]]
 +
[[Category: Cobb, G]]
 +
[[Category: Filippova, E V]]
 +
[[Category: Joachimiak, A]]
 +
[[Category: Kiryukhina, O]]
 +
[[Category: Structural genomic]]
 +
[[Category: Minasov, G]]
 +
[[Category: Shuvalova, L]]
[[Category: Endonuclease]]
[[Category: Endonuclease]]
[[Category: Mcsg]]
[[Category: Mcsg]]
-
[[Category: Midwest center for structural genomic]]
 
[[Category: Neisseria gonorrhoeae]]
[[Category: Neisseria gonorrhoeae]]
-
[[Category: Protein structure initiative]]
+
[[Category: PSI, Protein structure initiative]]
-
[[Category: Psi-2]]
+
-
[[Category: Structural genomic]]
+
[[Category: Unknown function]]
[[Category: Unknown function]]

Current revision

Crystal structure of a putative endonuclease-like protein (ngo0050) from neisseria gonorrhoeae

PDB ID 3hrl

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools