2b3e
From Proteopedia
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| - | [[Image:2b3e.gif|left|200px]]<br /><applet load="2b3e" size="350" color="white" frame="true" align="right" spinBox="true" | ||
| - | caption="2b3e, resolution 1.36Å" /> | ||
| - | '''Crystal structure of DB819-D(CGCGAATTCGCG)2 complex.'''<br /> | ||
| - | == | + | ==Crystal structure of DB819-D(CGCGAATTCGCG)2 complex.== |
| + | <StructureSection load='2b3e' size='340' side='right'caption='[[2b3e]], [[Resolution|resolution]] 1.36Å' scene=''> | ||
| + | == Structural highlights == | ||
| + | <table><tr><td colspan='2'>[[2b3e]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2B3E OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2B3E FirstGlance]. <br> | ||
| + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.36Å</td></tr> | ||
| + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=DBN:6-(4,5-DIHYDRO-1H-IMIDAZOL-2-YL)-2-{5-[4-(4,5-DIHYDRO-1H-IMIDAZOL-2-YL)PHENYL]THIEN-2-YL}-1H-BENZIMIDAZOLE'>DBN</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr> | ||
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2b3e FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2b3e OCA], [https://pdbe.org/2b3e PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2b3e RCSB], [https://www.ebi.ac.uk/pdbsum/2b3e PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2b3e ProSAT]</span></td></tr> | ||
| + | </table> | ||
| + | <div style="background-color:#fffaf0;"> | ||
| + | == Publication Abstract from PubMed == | ||
The crystal structure of the DNA minor groove biphenyl benzimidazole diamidine ligand DB819 has been determined, bound to the DNA sequence d(CGCGAATTCGCG)(2), at a resolution of 1.36 Angstrom. Conditions for reliable in silico docking that reproduce the observed position of the ligand in the minor groove have been determined. | The crystal structure of the DNA minor groove biphenyl benzimidazole diamidine ligand DB819 has been determined, bound to the DNA sequence d(CGCGAATTCGCG)(2), at a resolution of 1.36 Angstrom. Conditions for reliable in silico docking that reproduce the observed position of the ligand in the minor groove have been determined. | ||
| - | + | Targeting the DNA minor groove with fused ring dicationic compounds: comparison of in silico screening and a high-resolution crystal structure.,Campbell NH, Evans DA, Lee MP, Parkinson GN, Neidle S Bioorg Med Chem Lett. 2006 Jan 1;16(1):15-9. Epub 2005 Nov 2. PMID:16263285<ref>PMID:16263285</ref> | |
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| - | + | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | |
| - | + | </div> | |
| - | [[Category: | + | <div class="pdbe-citations 2b3e" style="background-color:#fffaf0;"></div> |
| - | [[Category: Campbell | + | == References == |
| - | [[Category: Evans | + | <references/> |
| - | [[Category: Lee | + | __TOC__ |
| - | [[Category: Neidle | + | </StructureSection> |
| - | [[Category: Parkinson | + | [[Category: Large Structures]] |
| - | + | [[Category: Campbell NH]] | |
| - | + | [[Category: Evans DA]] | |
| - | + | [[Category: Lee MP]] | |
| - | + | [[Category: Neidle S]] | |
| - | + | [[Category: Parkinson GN]] | |
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Current revision
Crystal structure of DB819-D(CGCGAATTCGCG)2 complex.
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