Ribosomal protein S10

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[[Image:RPS10.png|left|200px|thumb|Crystal Structure of Ribosomal protein S10 [[2zm6]]]]
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<StructureSection load='2mew' size='350' side='right' caption='Structure of ribosomal protein S10 (PDB entry [[2mew]])' scene=''>
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{{STRUCTURE_3d3b| PDB=3d3b | SIZE=400| SCENE=|right|CAPTION=Ribosomal protein S10 (blue) complex with NUSB (grey) and CHES [[3d3b]]}}
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'''Ribosomal protein S10''' (RPS10) is one of the 21 proteins which belong to the 30S small subunit of the [http://en.wikipedia.org/wiki/Bacteria bacterial] [[ribosome]] or the 30 proteins which belong to the 40S small subunit of the eukaryotic ribosome. It functions in binding tRNA to the ribosome and operates as a transcriptional elongation factor<ref>PMID:2987961</ref>.
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</StructureSection>
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'''Ribosomal protein S10''' (RPS10) is one of the 22 proteins which belong to the small subunit of the [http://en.wikipedia.org/wiki/Bacteria bacterial] [[ribosome]]. It functions in binding tRNA to the ribosome and operates as a transcriptional elongation factor. The images at the left and at the right correspond to one representative RPS10, ''i.e.'' the crystal structure of Ribosomal protein S10 from ''Thermus thermophilus'' ([[2zm6]], chain J).
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{{TOC limit|limit=2}}
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== 3D Structures of Ribosomal protein S10 ==
== 3D Structures of Ribosomal protein S10 ==
Updated on {{REVISIONDAY2}}-{{MONTHNAME|{{REVISIONMONTH}}}}-{{REVISIONYEAR}}
Updated on {{REVISIONDAY2}}-{{MONTHNAME|{{REVISIONMONTH}}}}-{{REVISIONYEAR}}
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{{#tree:id=OrganizedByTopic|openlevels=0|
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=== S10 + Protein ===
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*RPS10
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[[3imq]], [[3d3b]], [[3d3c]] - EcRPS10 +NUSB - ''Escherichia coli''<br />
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[[3r2c]], [[3r2d]] – RPS10 + NUSB + RNA – ''Aquifex aeolicus''
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=== S10 in small ribosomal subunit ===
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[[2zm6]], [[1n36]], [[1j5e]], [[3oto]] - TtRPS10 in 30S ribosomal subunit+THX+16S RRNA – ''Thermus thermophilus''<br />
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[[2vqe]], [[2vqf]], [[2uuc]], [[2e5l]], [[2uu9]], [[2uua]], [[2uub]], [[3pyn]], [[3pyq]], [[3pys]], [[3pyu]] - TtRPS10 in 30S ribosomal subunit+16S RRNA+RNA fragment<br />
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[[3kc4]] – EcRPS10 in 30S ribosomal subunit <br />
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[[3i1m]], [[3i1o]], [[3df1]], [[3df3]], [[2vho]], [[2vhp]], [[2avy]], [[2aw7]], [[1pnx]], [[3or9]], [[3ora]] - EcRPS10 in 30S ribosomal subunit+16S RRNA<br />
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[[1i94]], [[1fka]], [[3uxs]], [[3uxt]], [[4dr1]] - TtRPS10 in 30S ribosomal subunit+16S RRNA<br />
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[[4dr4]] – TtRPS10 in 30S ribosomal subunit+16S RRNA + mRNA<br />
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[[1p87]], [[1p6g]] - EcRPS10 in 30S ribosomal subunit+16S RRNA – Cryo-EM<br />
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[[3bbn]] - RPS10 in 30S ribosomal subunit+16S RRNA – Cryo-EM – spinach<br />
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=== S10 in small + large ribosomal subunit ===
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[[1ml5]] - EcRPS10 in 30S ribosomal subunit+50S ribosomal subunit+THX+chain release factor 2+P-site tRNA+tRNA Phe+mRNA fragment+23S RRNA+5S RRNA+16S RRNA - EM<br />
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=== S10 in small ribosomal subunit+ chain release factor ===
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[[3mr8]], [[3ms0]] – TtRPS10 in 30S ribosomal subunit+THX+chain release factor 1+P-site tRNA+mRNA+16S RRNA<br />
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[[3d5a]], [[3d5c]] - TtRPS10 in 30S ribosomal subunit+THX+chain release factor 1+P-site tRNA+E-site tRNA+mRNA +16S RRNA<br />
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[[3zvo]] – TtRPS10 in 30S ribosomal subunit+THX+P-site tRNA Met +mRNA +16S RRNA+chain release factor 3<br />
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[[2b64]] - TtRPS10 in 30S ribosomal subunit+THX+P-site tRNA Phe+E-site tRNA Phe+mRNA +16S RRNA+chain release factor 1<br />
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[[2b9m]] - TtRPS10 in 30S ribosomal subunit+THX+P-site tRNA Phe+E-site tRNA Phe+mRNA +16S RRNA+chain release factor 2<br />
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[[2x9r]], [[2x9t]], [[2wh1]], [[2wh3]] - TtRPS10 in 30S ribosomal subunit+THX+chain release factor 2+P-site tRNA+mRNA +16S RRNA<br />
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[[3f1e]], [[3f1g]] - TtRPS10 in 30S ribosomal subunit+THX+chain release factor 2+P-site tRNA+E-site tRNA +16S RRNA<br />
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[[3uoq]] – EcRPS10 + 16S RRNA + mRNA + chain release factor 3
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=== S10 in small ribosomal subunit+tRNA+mRNA ===
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[[2hgi]] - TtRPS10 in 30S ribosomal subunit+16S RRNA+tRNA Phe+tRNA fMet<br />
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[[2hgp]] - TtRPS10 in 30S ribosomal subunit+16S RRNA+tRNA Phe+mRNA<br />
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[[3t1h]], [[3t1y]] - TtRPS10 in 30S ribosomal subunit+16S RRNA+tRNA Lys +mRNA<br />
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[[3tvf]], [[3tvg]], [[3uyd]], [[3uyf]] - TtRPS10 in 30S ribosomal subunit+16S RRNA+tRNA Leu + tRNA fMet + mRNA<br />
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[[3uz6]], [[3uz7]], [[3uzg]], [[3uzi]] - TtRPS10 in 30S ribosomal subunit+16S RRNA+tRNA Tyr + tRNA fMet + mRNA<br />
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[[2i2p]], [[2i2u]] - EcRPS10 in 30S ribosomal subunit+16S RRNA+tRNA Phe+mRNA<br />
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[[2hgr]] - TtRPS10 in 30S ribosomal subunit+16S RRNA+tRNA Phe+tRNA fMet+mRNA<br />
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[[1yl4]] – TtRPS10 in 30S ribosomal subunit+ tRNA Phe+16S RRNA+THRS mRNA operator<br />
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[[1pns]] - EcRPS10 in 30S ribosomal subunit+ tRNA Phe+16S RRNA+mRNA <br />
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[[3j0u]], [[3j0v]], [[3j0x]], [[3j0z]], [[3j10]], [[3j20]] – EcRPS10 in 30S ribosomal subunit+ A-site tRNA + P-site tRNA +16S RRNA+mRNA – Cryo-EM<br />
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[[3j13]] – EcRPS10 in 30S ribosomal subunit+ P-site tRNA +16S RRNA+mRNA – Cryo-EM<br />
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[[1xnq]], [[1xnr]] - TtRPS10 in 30S ribosomal subunit+THX+mRNA+tRNA anticodon+16S RRNA<br />
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=== S10 in small ribosomal subunit+A-site tRNA ===
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[[2uxd]], [[2uxc]] - TtRPS10 in 30S ribosomal subunit+THX+A-site mRNA CGGG+tRNA anticodon+16S RRNA<br />
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[[1n32]], [[1n33]] - TtRPS10 in 30S ribosomal subunit+THX+A-site mRNA fragment+tRNA anticodon+16S RRNA<br />
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[[1n34]] - TtRPS10 in 30S ribosomal subunit+THX+A-site mRNA fragment +16S RRNA<br />
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[[1xmo]], [[1xmq]] - TtRPS10 in 30S ribosomal subunit+THX+A-site mRNA+tRNA anticodon+16S RRNA<br />
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[[2uxb]] - TtRPS10 in 30S ribosomal subunit+THX+A-site mRNA GGGU+tRNA anticodon+16S RRNA<br />
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=== S10 in small ribosomal subunit+P-site tRNA ===
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[[3i8g]] - TtRPS10 in 30S ribosomal subunit+P-site tRNA+mRNA +16S RRNA<br />
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[[3i8h]], [[3i9b]], [[3i9d]] - TtRPS10 in 30S ribosomal subunit+THX+P-site tRNA+mRNA +16S RRNA<br />
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[[1ibk]] - TtRPS10 in 30S ribosomal subunit+THX+P-site mRNA fragment +16S RRNA<br />
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[[2wwl]] - EcRPS10 in 30S ribosomal subunit+Poly-Ala chain+P-site tRNA+mRNA +16S RRNA - ''Escherichia coli''<br />
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[[3i1q]] - EcRPS10 in 30S ribosomal subunit+P-site tRNA hairpin+mRNA <br />
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[[3i1s]], [[3i1z]], [[3i21]] - EcRPS10 in 30S ribosomal subunit+P-site tRNA hairpin+mRNA +16S RNA<br />
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=== S10 in small ribosomal subunit+A-site tRNA+P-site tRNA ===
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[[1ibl]], [[1ibm]] - TtRPS10 in 30S ribosomal subunit+THX+A-site mRNA fragment+P-site mRNA fragment+tRNA anticodon+16S RRNAv
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=== S10 in small ribosomal subunit+P-site tRNA+E-site tRNA ===
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[[2ow8]] - TtRPS10 in 30S ribosomal subunit+THX+P-site tRNA Phe+E-site tRNA+mRNA +16S RRNA<br />
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[[2b9o]] - TtRPS10 in 30S ribosomal subunit+THX+P-site tRNA Phe+E-site tRNA Phe+mRNA +16S RRNA<br />
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[[2qnh]] - TtRPS10 in 30S ribosomal subunit+THX+P-site tRNA+E-site tRNA+mRNA +16S RRNA<br />
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[[2wdg]], [[2wdh]], [[2wdk]], [[2wdm]] - TtRPS10 in 30S ribosomal subunit+THX+P-site tRNA+E-site tRNA+mRNA +16S RRNA+tRNA Phe<br />
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=== S10 in small ribosomal subunit+A-site tRNA+P-site tRNA+E-site tRNA ===
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[[2gy9]], [[2gyb]] - EcRPS10 in 30S ribosomal subunit+P-site tRNA+A-site tRNA+E-site tRNA+mRNA +16S RRNA – Cryo-EM<br />
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[[1jgo]], [[1jgp]], [[1jgq]], [[1gix]] - TtRPS10 in 30S ribosomal subunit+P-site tRNA+A-site tRNA+E-site tRNA+tRNA Phe+mRNA +16S RRNA<br />
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[[3e1a]], [[3e1c]] - EcRPS10 in 30S ribosomal subunit+P-site tRNA+A-site tRNA+E-site tRNA+mRNA +16S RRNA<br />
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=== S10 in small ribosomal subunit + antibiotics ===
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[[1i95]], [[1i97]],[[2hhh]], [[2f4v]], [[3oge]], [[3ogy]], [[3ohc]], [[3ohd]], [[3ohy]], [[3oi0]], [[3oi2]], [[3oi4]], [[4dr2]], [[4dr3]] - TtRPS10 in 30S ribosomal subunit+16S RRNA+antibiotic<br />
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[[1hnw]], [[1hnx]], [[1hnz]], [[1fjg]], [[4aqy]], [[4dr5]], [[4dr6]], [[4dr7]] - TtRPS10 in 30S ribosomal subunit+16S RRNA+mRNA fragment+antibiotic<br />
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[[2qbb]], [[2qb9]], [[1vs5]], [[1vs7]], [[2qan]], [[2qal]], [[2qou]], [[2qow]], [[2qoy]], [[2qp0]], [[2z4k]], [[2z4m]], [[3oaq]], [[3oar]], [[3ofa]], [[3ofb]], [[3ofo]], [[3ofp]], [[3ofx]], [[3ofy]] - EcRPS10 in 30S ribosomal subunit+16S RRNA+antibiotic<br />
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[[3sfs]] – EcRPS10 in 30S ribosomal subunit+16S RRNA+ mRNA + RF-3 + antibiotic<br />
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[[4gaq]], [[4gas]] – EcRPS10 in 30S ribosomal subunit+16S RRNA+ mRNA + antibiotic<br />
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[[2j00]], [[2j02]] - TtRPS10 in 30S ribosomal subunit+16S RRNA+paromomycin+P-site tRNA fMet+E-site tRNA Phe+mRNA<br />
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[[3knj]], [[3knh]] - TtRPS10 in 30S ribosomal subunit+P-site tRNA+A-site tRNA+E-site tRNA+mRNA +16S RRNA+viomycin<br />
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[[3knl]], [[3knn]] - TtRPS10 in 30S ribosomal subunit+P-site tRNA+A-site tRNA+E-site tRNA+mRNA +16S RRNA+capreomycin<br />
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[[3uz3]], [[3uz4]] - TtRPS10 in 30S ribosomal subunit+16S RRNA+tRNA Leu + tRNA fMet + mRNA + paromomycin<br />
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[[3uzl]], [[3uzm]] - TtRPS10 in 30S ribosomal subunit+16S RRNA+tRNA Tyr + tRNA fMet + mRNA + paromomycin
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=== S10 in small ribosomal subunit + ribosome recycling factor ===
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[[2qbd]], [[2qbf]] – EcRPS10 in 30S ribosomal subunit+16S RRNA+ribosome recycling factor<br />
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[[3r8n]], [[3r8o]], [[4gd1]], 4gd2]] – EcRPS3 in 30S ribosomal subunit+16S RRNA+ribosome recycling factor + mRNA + tRNA<br />
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[[2qbh]], [[2qbj]] - EcRPS10 in 30S ribosomal subunit+16S RRNA+ribosome recycling factor+gentamicin<br />
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[[2v46]], [[2v48]] - TtRPS10 in 30S ribosomal subunit+16S RRNA+ribosome recycling factor+P-site tRNA Phe+mRNA+tRNA fMet<br />
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=== S10 in small ribosomal subunit + elongation factor ===
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[[2wri]], [[2wrk]] - TtRPS10 in 30S ribosomal subunit+THX+P-site tRNA+mRNA +16S RRNA+elongation factor G<br />
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[[2wrn]], [[2wrq]] - TtRPS10 in 30S ribosomal subunit+THX+A-site tRNA+mRNA +16S RRNA+elongation factor TU-4<br />
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[[3fic]] - TtRPS10 in 30S ribosomal subunit+THX+A-site tRNA+P-site tRNA+E-site tRNA+mRNA codon+16S RRNA+elongation factor TU-A<br />
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[[4abr]] – TtRPS10 in 30S ribosomal subunit+THX + E/P-site tRNA fMet +mRNA codon+16S RRNA+elongation factor TU<br />
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[[3izv]] – EcRPS10 in 30S ribosomal subunit+A/T-site tRNA Phe +16S RRNA+elongation factor TU<br />
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[[3j18]] - EcRPS10 in 30S ribosomal subunit+A/T-site tRNA Phe +16S RRNA+ mRNA + SSRA-binding protein + formyl-Met specific initiator tRNA + elongation factor G – Cryo-EM<br />[[3izw]] – EcRPS10 in 30S ribosomal subunit+A-site tRNA Phe +mRNA +16S RRNA+elongation factor TU<br />
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[[2y0u]], [[2y0w]], [[2y0y]], [[2y10]], [[2y12]], [[2y14]], [[2y16]], [[2y18]] - TtRPS10 in 30S subunit+THX+A-site tRNA+E-site tRNA+mRNA codon+16S RRNA+elongation factor TU<br />
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[[3fih]] - EcRPS10 in 30S ribosomal subunit+A-site tRNA Phe+P-site tRNA+mRNA +16S RRNA+elongation factor TU<br />
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[[3huw]], [[3huy]] - TtRPS10 in 30S ribosomal subunit+THX+tRNA-Met+mRNA +16S RRNA+elongation factor P<br />
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=== S10 in small ribosomal subunit + translation initiation factor ===
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[[1i96]] - TtRPS10 in 30S ribosomal subunit+THX+IF3+16S RRNA<br />
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[[1hr0]] - TtRPS10 in 30S ribosomal subunit+THX+IF+16S RRNA<br />
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=== S10 in small ribosomal subunit + various proteins ===
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**[[2mew]] – RPS10 – ''Thermotoga maritima'' – NMR<br />
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[[3kiq]], [[3kis]], [[3kiu]], [[3kix]] - TtRPS10 in 30S ribosomal subunit+toxin RelE+16S RRNA<br />
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*RPS10 + Protein
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[[4dh9]], [[4dhb]] - TtRPS10 in 30S ribosomal subunit +16S RRNA+mRNA+P-site tRNA fMet +THX + YAEJ<br />
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[[1voq]], [[1vos]], [[1vov]], [[1vox]], [[1voz]] - EcRPS10 in 30S ribosomal subunit+protein Y+16S RRNA<br />
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[[2xfz]], [[2xg1]] - TtRPS10 in 30S ribosomal subunit+tRNA Phe+mRNA+colicin E3+16S RRNA<br />
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[[3j00]] – EcRPS10 + 16S RRNA + FTSQ + apolipoprotein A-I<br />
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[[2xzm]], [[2xzn]] - RPS10 in 40S subunit+18S RRNA+RACK1 - ''Tetrahymena thermophila''<br />
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[[2ykr]] – EcRPS10 + 16S RRNA + GMPPNP + GTPase RSGA<br />
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[[4a2i]] – EcRPS10 + 16S RRNA + GTPase RSGA – Cryo EM<br />
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[[4adv]] - EcRPS10 + 16S RRNA + methyltransferase – Cryo EM<br />
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[[3v22]], [[3v24]], [[3v26]], [[3v28]] – TtRPS10 in 30S ribosomal subunit +16S RRNA +THX + modulation factor<br />
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[[3v2c]], [[3v2e]] – TtRPS10 in 30S ribosomal subunit +16S RRNA +THX + ribosome-associated inhibitor<br />
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[[3iz6]] - RPS10 in 40S ribosomal subunit+RACK1 – wheat – Cryo EM <br />
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[[3izb]] - yRPS10 in 40S ribosomal subunit+ RACK1 – yeast - Cryo-EM<br />
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[[3u5c]], [[3u5g]] - yRPS10 in 40S ribosomal subunit+ RACK1 + suppressor protein SMT1<br />
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**[[3imq]], [[3d3b]], [[3d3c]] - EcRPS10 +NUSB - ''Escherichia coli''<br />
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**[[5lm7]] - EcRPS10 +NUSB + NUSA + antitermination protein<br />
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**[[3w1y]] – EcRPS10 + microtubule-associated protein<br />
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**[[3r2c]], [[3r2d]] – RPS10 + NUSB + RNA – ''Aquifex aeolicus''
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}}
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== References ==
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<references/>
[[Category:Topic Page]]
[[Category:Topic Page]]

Current revision

Structure of ribosomal protein S10 (PDB entry 2mew)

Drag the structure with the mouse to rotate

3D Structures of Ribosomal protein S10

Updated on 28-September-2017

References

  1. ↑ Das A, Ghosh B, Barik S, Wolska K. Evidence that ribosomal protein S10 itself is a cellular component necessary for transcription antitermination by phage lambda N protein. Proc Natl Acad Sci U S A. 1985 Jun;82(12):4070-4. PMID:2987961

Proteopedia Page Contributors and Editors (what is this?)

Michal Harel, Alexander Berchansky

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