1z98
From Proteopedia
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| - | {{STRUCTURE_1z98| PDB=1z98 | SCENE= }} | ||
| - | ===Crystal structure of the spinach aquaporin SoPIP2;1 in a closed conformation=== | ||
| - | {{ABSTRACT_PUBMED_16340961}} | ||
| - | == | + | ==Crystal structure of the spinach aquaporin SoPIP2;1 in a closed conformation== |
| - | [[1z98]] is a 2 chain structure with sequence from [ | + | <StructureSection load='1z98' size='340' side='right'caption='[[1z98]], [[Resolution|resolution]] 2.10Å' scene=''> |
| + | == Structural highlights == | ||
| + | <table><tr><td colspan='2'>[[1z98]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Spinacia_oleracea Spinacia oleracea]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1Z98 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1Z98 FirstGlance]. <br> | ||
| + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.1Å</td></tr> | ||
| + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CD:CADMIUM+ION'>CD</scene></td></tr> | ||
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1z98 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1z98 OCA], [https://pdbe.org/1z98 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1z98 RCSB], [https://www.ebi.ac.uk/pdbsum/1z98 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1z98 ProSAT]</span></td></tr> | ||
| + | </table> | ||
| + | == Function == | ||
| + | [https://www.uniprot.org/uniprot/Q41372_SPIOL Q41372_SPIOL] | ||
| + | == Evolutionary Conservation == | ||
| + | [[Image:Consurf_key_small.gif|200px|right]] | ||
| + | Check<jmol> | ||
| + | <jmolCheckbox> | ||
| + | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/z9/1z98_consurf.spt"</scriptWhenChecked> | ||
| + | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked> | ||
| + | <text>to colour the structure by Evolutionary Conservation</text> | ||
| + | </jmolCheckbox> | ||
| + | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1z98 ConSurf]. | ||
| + | <div style="clear:both"></div> | ||
| + | <div style="background-color:#fffaf0;"> | ||
| + | == Publication Abstract from PubMed == | ||
| + | Plants counteract fluctuations in water supply by regulating all aquaporins in the cell plasma membrane. Channel closure results either from the dephosphorylation of two conserved serine residues under conditions of drought stress, or from the protonation of a conserved histidine residue following a drop in cytoplasmic pH due to anoxia during flooding. Here we report the X-ray structure of the spinach plasma membrane aquaporin SoPIP2;1 in its closed conformation at 2.1 A resolution and in its open conformation at 3.9 A resolution, and molecular dynamics simulations of the initial events governing gating. In the closed conformation loop D caps the channel from the cytoplasm and thereby occludes the pore. In the open conformation loop D is displaced up to 16 A and this movement opens a hydrophobic gate blocking the channel entrance from the cytoplasm. These results reveal a molecular gating mechanism which appears conserved throughout all plant plasma membrane aquaporins. | ||
| - | + | Structural mechanism of plant aquaporin gating.,Tornroth-Horsefield S, Wang Y, Hedfalk K, Johanson U, Karlsson M, Tajkhorshid E, Neutze R, Kjellbom P Nature. 2006 Feb 9;439(7077):688-94. Epub 2005 Dec 7. PMID:16340961<ref>PMID:16340961</ref> | |
| - | + | ||
| - | + | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | |
| - | < | + | </div> |
| + | <div class="pdbe-citations 1z98" style="background-color:#fffaf0;"></div> | ||
| + | |||
| + | ==See Also== | ||
| + | *[[Aquaporin 3D structures|Aquaporin 3D structures]] | ||
| + | == References == | ||
| + | <references/> | ||
| + | __TOC__ | ||
| + | </StructureSection> | ||
| + | [[Category: Large Structures]] | ||
[[Category: Spinacia oleracea]] | [[Category: Spinacia oleracea]] | ||
| - | [[Category: Hedfalk | + | [[Category: Hedfalk K]] |
| - | [[Category: Johanson | + | [[Category: Johanson U]] |
| - | [[Category: Karlsson | + | [[Category: Karlsson M]] |
| - | [[Category: Kjellbom | + | [[Category: Kjellbom P]] |
| - | [[Category: Neutze | + | [[Category: Neutze R]] |
| - | [[Category: Tornroth-Horsefield | + | [[Category: Tornroth-Horsefield S]] |
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Current revision
Crystal structure of the spinach aquaporin SoPIP2;1 in a closed conformation
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